Skip to main content
. Author manuscript; available in PMC: 2019 Jun 5.
Published in final edited form as: Biochemistry. 2018 Mar 26;57(22):3146–3154. doi: 10.1021/acs.biochem.8b00142

Table 2. Kinetic parameters for WT and D219A GMPR.

Reactions were performed in 75 mM Tris, pH 7.8, 100 mM KCl, 1 mM DTT and 0.5 mM EDTA at 25 °C. NADPH consumption/formation was monitored as described in Methods. Values are the average and standard error of at least two independent experiments. “Km(S)” denotes the Km of GMP, dGMP, IMP or dIMP, as appropriate. “k” denotes kcat for the reaction of dGMP+NADPH, Vm/[E] for the reaction of dIMP+NADP++NH3 and kobs for the partial reaction of dIMP+NADP+.

Enzyme Reaction Km (S)
(μM)
Km (cofactor)
(μM)
k
(s−1)
WT GMP + NADPH a 3.2 ± 0.5 10.1 ± 0.8 0.35 ± 0.01
dGMP + NADPH b 15 ± 3 16 ± 4 0.023 ± 0.002
D219A GMP + NADPH c 380 ± 130 120 ± 20 0.013 ± 0.003
WT IMP + NADP+ + NH3 d 23 ± 6 50 ± 16 0.018 ± 0.009
dIMP + NADP+ + NH3 e 140 ± 20 109 ± 28 0.002 ± 0.001
D219A IMP + NADP+ + NH3 f 1100 ± 240 420 ± 220 (4.0 ± 0.3) x 10−4
WT IMP + NADP+ g n.a. n.a. 0.49 ± 0.01 (16%)
dIMP + NADP+ g n.a. n.a. 0.064 ± 0.001 (10%)
D219A IMP + NADP+ g n.a. n.a. 0.055 ± 0.003 (2.8%)
a

Values from 13.

b

Reactions performed at saturating concentrations of the fixed substrate dGMP (200 μM) and NADPH (150 μM).

c

Reactions performed at saturating concentrations of GMP (2 mM) and NADPH (600 μM).

d

Reactions performed at saturating concentrations of IMP (500 μM), NADP+ (500 μM) and NH4+ (20 mM).

e

Reactions performed at saturating concentrations of the fixed substrate, IMP (1 mM) and NADP+ (500 μM).

f

Reactions performed at saturating concentrations of the fixed substrate, IMP (10 mM) and NADP+ (3 mM).

g

Reactions performed at saturating conditions as described above. The percentage of NADPH produced per active site at equilibrium is shown in parentheses; n.a., not applicable