Table 1.
Species list, mitochondrial genome size (bp), number of introns in the cox1 gene, and the number of HEGs in the cox1gene. Quantification of number of introns in the other mitochondrial genes present, total number of genes, and total genome‐wide number of introns in each species
| Species | Genome Size (bp) | Number of cox1 Introns | Number of HEGs in cox1 | cox2 | cox3 | cob | atp6 | atp8 | atp9 | nad1 | nad2 | nad3 | nad4 | nad4L | nad5 | nad6 | rps3 | Total Number of Genes | Total Number of Introns |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Alectoria fallacina | 75,417 | 7 | 6 | 1 | 1 | 1 | 1 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 2 | 0 | 7 | 14 | 22 |
| Arthonia ruana | 27,342 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 15 | 2 |
| Arthonia susa | 50,798 | 6 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 1 | 15 | 11 |
| Bacidia sp. | 38,546 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | X | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 14 | 3 |
| Cladonia apodocarpa | 50,456 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 15 | 5 |
| Cladonia caroliniana | 51,501 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 15 | 4 |
| Cladonia furcata | 59,877 | 5 | 3 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 2 | 15 | 11 |
| Cladonia leporina | 50,045 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 15 | 5 |
| Cladonia petrophila | 53,100 | 5 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 15 | 8 |
| Cladonia peziziformis | 45,312 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 15 | 3 |
| Cladonia rangiferina | 59,116 | 4 | 3 | 0 | 0 | 2 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 15 | 11 |
| Cladonia robbinsii | 50,467 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 15 | 4 |
| Cladonia stipitata | 60,062 | 5 | 4 | 0 | 0 | 2 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 15 | 9 |
| Cladonia subtenuis | 59,878 | 3 | 3 | 0 | 0 | 2 | 0 | 0 | 0 | 2 | 0 | 0 | 0 | 0 | 1 | 0 | 2 | 15 | 10 |
| Cladonia uncialis | 66,118 | 5 | 4 | 0 | 0 | 2 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 2 | 0 | 1 | 15 | 11 |
| Coccocarpia palmicola | 73,992 | 8 | 7 | 0 | 0 | 3 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 4 | 0 | 0 | 15 | 17 |
| Gomphillus americanus | 28,370 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | X | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 14 | 2 |
| Graphis lineola | 24,945 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 15 | 0 |
| Heterodermia albicans | 78,599 | 4 | 3 | 0 | 0 | 0 | 0 | 0 | X | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 14 | 6 |
| Heterodermia appalachensis | 71,468 | 5 | 4 | 0 | 0 | 2 | 0 | 0 | X | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 14 | 9 |
| Heterodermia casarettiana | 84,088 | 4 | 5 | 0 | 0 | 2 | 0 | 0 | X | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 14 | 7 |
| Heterodermia echinata | 84,401 | 4 | 6 | 1 | 0 | 3 | 0 | 0 | X | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 14 | 10 |
| Heterodermia speciosa1 | 90,247 | 6 | 5 | 0 | 0 | 1 | 0 | 0 | X | 0 | 0 | 1 | 0 | 0 | 3 | 0 | 0 | 14 | 11 |
| Heterodermia speciosa2 | 75,318 | 6 | 5 | 0 | 0 | 1 | 0 | 0 | X | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 14 | 8 |
| Heterodermia squamulosa | 79,783 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | X | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 14 | 5 |
| Hypogymnia vittata | 38,888 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | X | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 14 | 2 |
| Icmadophila ericetorum | 43,773 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 15 | 3 |
| Imshaugia aleurites | 32,029 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | X | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 14 | 1 |
| Lecanora cinereofusca | 32,357 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | X | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 14 | 1 |
| Lecanora saxigena | 56,579 | 7 | 5 | 1 | 0 | 1 | 0 | 0 | X | 2 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 14 | 13 |
| Lepraria oxybapha | 40,221 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 1 | 15 | 4 |
| Leptogium hirsutum | 120,920 | 3 | 2 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 4 | 0 | 1 | 15 | 10 |
| Menegazzia subsimilis | 89,994 | 5 | 5 | 1 | 1 | 2 | 0 | 0 | X | 1 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 14 | 12 |
| Opegrapha vulgata | 38,937 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 15 | 3 |
| Parmotrema austrosinense | 92,711 | 6 | 4 | 0 | 1 | 0 | 0 | 0 | X | 2 | 0 | 0 | 1 | 0 | 3 | 0 | 0 | 14 | 13 |
| Parmotrema cetratum | 95,763 | 7 | 8 | 0 | 1 | 0 | 0 | 0 | X | 2 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 14 | 11 |
| Parmotrema crinitum | 86,310 | 5 | 4 | 0 | 0 | 2 | 0 | 0 | X | 2 | 0 | 0 | 1 | 0 | 2 | 0 | 1 | 14 | 13 |
| Parmotrema diffractaicum | 89,358 | 5 | 6 | 0 | 1 | 1 | 0 | 0 | X | 2 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 14 | 10 |
| Parmotrema internexum | 95,771 | 6 | 6 | 0 | 1 | 3 | 0 | 0 | X | 1 | 0 | 0 | 1 | 0 | 3 | 0 | 2 | 14 | 17 |
| Parmotrema margaritatum | 101,180 | 2 | 1 | 0 | 1 | 1 | 0 | 0 | X | 2 | 0 | 0 | 1 | 0 | 1 | 0 | 1 | 14 | 9 |
| Parmotrema mellissi | 97,183 | 6 | 5 | 0 | 0 | 2 | 0 | 0 | X | 2 | 0 | 0 | 1 | 0 | 3 | 0 | 1 | 14 | 15 |
| Parmotrema neotropicum | 124,067 | 6 | 6 | 0 | 2 | 2 | 0 | 0 | X | 7 | 1 | 0 | 1 | 0 | 3 | 1 | 0 | 14 | 23 |
| Parmotrema stuppeum | 108,024 | 5 | 6 | 0 | 1 | 2 | 0 | 0 | X | 3 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 14 | 13 |
| Parmotrema ultralucens | 79,456 | 1 | 1 | 0 | 1 | 1 | 0 | 0 | X | 2 | 0 | 0 | 1 | 0 | 2 | 0 | 0 | 14 | 8 |
| Pertusaria obruta | 86,976 | 6 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 15 | 13 |
| Pertusaria ostiolata | 62,290 | 1 | 2 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 15 | 5 |
| Pertusaria plittiana | 93,709 | 4 | 4 | 1 | 0 | 2 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 15 | 11 |
| Pertusaria propinqua | 79,765 | 5 | 3 | 1 | 0 | 2 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | 15 | 11 |
| Phlyctis boliviensis | 25,319 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 15 | 0 |
| Phyllopsora corallina | 39,591 | 2 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 15 | 3 |
| Usnea ceratina | 65,539 | 8 | 0 | 0 | 0 | 3 | 1 | 0 | X | 2 | 0 | 0 | 0 | 0 | 2 | 0 | 1 | 14 | 17 |
| Usnea cornuta | 68,791 | 8 | 0 | 1 | 1 | 2 | 1 | 0 | X | 1 | 0 | 0 | 0 | 0 | 2 | 0 | 1 | 14 | 17 |
| Usnea halei | 82,851 | 7 | 3 | 1 | 1 | 5 | 1 | 0 | X | 2 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 14 | 18 |
| Usnea mutabilis | 61,314 | 2 | 1 | 2 | 1 | 3 | 1 | 0 | X | 1 | 0 | 0 | 0 | 0 | 2 | 0 | 1 | 14 | 13 |
| Usnea pensylvanica | 80,874 | 9 | 1 | 1 | 1 | 2 | 1 | 0 | X | 2 | 0 | 0 | 1 | 0 | 3 | 0 | 1 | 14 | 21 |
| Usnea subfusca | 52,486 | 4 | 1 | 1 | 1 | 2 | 0 | 0 | X | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 14 | 10 |
| Usnea subgracilis | 95,033 | 7 | 0 | 2 | 1 | 3 | 0 | 0 | X | 1 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 14 | 17 |
| Usnea subscabrosa | 78,464 | 8 | 1 | 2 | 1 | 4 | 1 | 0 | X | 2 | 0 | 0 | 0 | 0 | 2 | 0 | 1 | 14 | 21 |