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. 2019 Mar 21;9(7):4245–4263. doi: 10.1002/ece3.5056

Table 2.

Number of homing endonucleases (types LAGLIDADG and GIY‐YIG) within the cox1gene, number of HEGs freestanding within an intron, and number of HEGs fused and sharing the same reading frame as the cox1gene

Species Number of cox1retrotransposons Freestanding within an intron Reading frame fused with the intron
Alectoria fallacina 6 3 3
Arthonia ruana 4 1 3
Arthonia susa 0 0 0
Bacidia sp. 0 0 0
Cladonia apodocarpa 3 0 3
Cladonia caroliniana 3 1 2
Cladonia furcata 3 1 2
Cladonia leporina 3 0 3
Cladonia petrophila 4 1 3
Cladonia peziziformis 0 0 0
Cladonia rangiferina 3 1 2
Cladonia robbinsii 2 1 1
Cladonia stipitata 4 1 3
Cladonia subtenuis 3 0 0
Cladonia uncialis 4 2 2
Coccocarpia palmicola 7 3 4
Gomphillus americanus 1 0 1
Graphis lineola 0 0 0
Heterodermia albicans 3 3 0
Heterodermia appalachensis 4 1 3
Heterodermia casarettiana 5 1 4
Heterodermia echinata 6 3 3
Heterodermia speciosa1 5 3 2
Heterodermia speciosa2 5 3 2
Heterodermia squamulosa 3 0 3
Hypogymnia vittata 0 0 0
Icmadophila ericetorum 0 0 0
Imshaugia aleurites 0 0 0
Lecanora cinereofusca 0 0 0
Lecanora saxigena 5 0 5
Lepraria oxybapha 0 0 0
Leptogium hirsutum 2 1 1
Menegazzia subsimilis 5 1 4
Opegrapha vulgata 0 0 0
Parmotrema austrosinense 4 1 3
Parmotrema cetratum 8 3 5
Parmotrema crinitum 4 2 2
Parmotrema diffractaicum 6 2 4
Parmotrema internexum 6 3 3
Parmotrema margaritatum 1 0 1
Parmotrema mellissi 5 3 2
Parmotrema neotropicum 6 4 2
Parmotrema stuppeum 6 3 3
Parmotrema ultralucens 1 0 1
Pertusaria obruta 0 0 0
Pertusaria ostiolata 2 1 1
Pertusaria plittiana 4 3 1
Pertusaria propinqua 3 1 2
Phlyctis boliviensis 0 0 0
Phyllopsora corallina 3 2 1
Usnea ceratina 0 0 0
Usnea cornuta 0 0 0
Usnea halei 3 0 3
Usnea mutabilis 1 0 1
Usnea pensylvanica 1 0 1
Usnea subfusca 1 0 1
Usnea subgracilis 0 0 0
Usnea subscabrosa 1 0 1