Table 5.
The summary of high confidence associated loci
| QTL name | SNP Marker | Chr.a | Position | Allele | Trait | -log10(P values) | Marker R2 (%) | Environmentsb |
|---|---|---|---|---|---|---|---|---|
| Qyrsicau-1AS | AX-110375459 | 1A | 55,931,144 | C/T | DS | 3.2–4.0 | 7.4–8.4 | MY16, CZ17, MY17 |
| Qyrsicau-1BL.1 | AX-108839316 | 1B | 670,373,135 | T/C | DS | 3.1–4.2 | 6.4–9.1 | MY16, MY17, WJ17 |
| AX-109440891 | 1B | 670,379,326 | T/A | DS | 3.1–4.1 | 6.4–7.9 | MY16, MY17, WJ17 | |
| AX-109389405 | 1B | 670,382,321 | T/C | DS | 3.4–4.0 | 7–9.5 | MY16, MY17, WJ17 | |
| AX-108930953 | 1B | 670,418,012 | C/T | DS | 3.9–4.2 | 8.1–10 | MY16, MY17, WJ17 | |
| AX-108800083 | 1B | 670,502,837 | A/G | DS | 3.2–4.3 | 5.3–7.2 | MY16, MY17, WJ17 | |
| AX-111488534 | 1B | 670,550,099 | T/C | IT & DS | 4.1–5.8 & 3.1–7.1 | 6.9–13.6 & 7.6–17.0 | CZ16, MY16, CZ17, MY17, WJ17 | |
| AX-109335890 | 1B | 670,593,327 | A/C | IT | 3.1–4.2 | 5.1–8.8 | CZ16, CZ17, MY17 | |
| Qyrsicau-1BL.2 | AX-111471952 | 1B | 681,682,184 | A/G | IT | 3.0–4.4 | 6.7–9.7 | CZ16, CZ17, MY17 |
| Qyrsicau-3DL | AX-109329567 | 3D | 595,680,421 | A/G | IT | 3.4–4.0 | 8–10.1 | CZ15, CZ17, MY17 |
| Qyrsicau-5AS* | AX-111623511 | 5A | 101,053,846 | A/G | IT | 3.5–4.2 | 8.1–9.7 | MY16, MY17, WJ17 |
| Qyrsicau-5AL* | AX-109907430 | 5A | 566,772,733 | T/C | DS | 3.0–4.4 | 6.1–10.4 | CZ16, MY16, WJ17 |
| Qyrsicau-5BL.1 | AX-111051502 | 5B | 554,577,408 | C/T | DS | 3.3–4.1 | 6.7–9.4 | MY16, MY17, WJ17 |
| Qyrsicau-5BL.2 | AX-110123238 | 5B | 589,800,894 | G/C | DS | 3.4–3.6 | 7.7–8.8 | MY16, CZ17, MY17 |
| Qyrsicau-6AS | AX-108943926 | 6A | 24,724,553 | A/G | DS | 3.3–3.9 | 7.2–9.5 | CZ15, MY16, MY17 |
| Qyrsicau-6BS | AX-109937061 | 6B | 28,634,217 | C/T | DS | 3.5–6.2 | 7.4–13.3 | MY16, MY17, WJ17 |
| Qyrsicau-7AS | AX-109348608 | 7A | 81,528,245 | G/A | IT | 3.1–3.6 | 6.8–8.2 | CZ15, CZ17, WJ17 |
| Qyrsicau-7BL | AX-110518451 | 7B | 711,405,854 | G/A | IT | 3.1–5.3 | 6.4–11.3 | CZ16, CZ17, MY17 |
achromosome
bthe environments where the high confidence associated marker can be identified in
* the potential novel QTL
CZ15 = Chongzhou 2015, CZ16 = Chongzhou 2016, MY16 = Mianyang 2016, CZ17 = Chongzhou 2017, MY17 = Mianyang 2017, WJ17 = Wenjiang 2017