Table 1. Genome and transcriptome libraries used in this study*.
| Type | Strain | SRA Accession | Sample name | Library type*** | Raw read pairs |
|---|---|---|---|---|---|
| Genome | APS4 | ERS3048742 (SAMEA5241338) | APS4_250bp_1 | PE | 30115881 |
| ERS3048743 (SAMEA5241339) | APS4_250bp_2 | PE | 44755823 | ||
| ERS3048744 (SAMEA5241340) | APS4_250bp_3 | PE | 48130281 | ||
| APS4 | ERS3048745 (SAMEA5241341) | APS4_3kb | MP | 141654936 | |
| ERS3048746 (SAMEA5241342) | APS4_6kb | MP | 108976027 | ||
| APS6 | ERS3048747 (SAMEA5241343) | APS6_450bp | PE | 24219024 | |
| Genome (RAD- seq) | F2Ls between APS4 and APS6 | ERS3048748 (SAMEA5241344) | 2014132_MBlib1 (24 samples) | RAD | 44063445 |
| ERS3048749 (SAMEA5241345) | 2014132_MBlib2 (24 samples) | RAD | 47384155 | ||
| ERS3048750 (SAMEA5241346) | 2014132_MBlib3 (24 samples) | RAD | 48905114 | ||
| ERS3048751 (SAMEA5241347) | 2014132_MBlib4 (25 samples) | RAD | 39742808 | ||
| Transcriptome | APS4 | See** | L2_fem_lib1 | RNA | 17110716 |
| L2_fem_lib2 | RNA | 16629611 | |||
| L2_fem_lib3 | RNA | 17379062 | |||
| L2_DA_fem_lib1 | RNA | 18536076 | |||
| L2_DA_fem_lib2 | RNA | 17170105 | |||
| L2_DA_fem_lib3 | RNA | 16962402 | |||
| L2_herm_lib1 | RNA | 15562977 | |||
| L2_herm_lib2 | RNA | 16078424 | |||
| L2_herm_lib3 | RNA | 16426418 | |||
| Males_lib1 | RNA | 16341785 | |||
| Males_lib2 | RNA | 16760682 | |||
| Males_lib3 | RNA | 13624819 | |||
| Mixed_stages_lib1 | RNA | 24190447 | |||
| Mixed_stages_lib2 | RNA | 22250315 | |||
| Mixed_stages_lib3 | RNA | 33719128 |
*
All genomic data have been submitted under Bioproject number PRJEB29492.
**
RNA-seq data have been deposited in the ArrayExpress database at EMBL-EBI (www.ebi.ac.uk/arrayexpress) under accession number E-MTAB-7667.
***
PE: paired-end genomic; MP: mate-pair genomic; RAD: paired-end RAD-seq; RNA: paired-end RNA-seq.