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. 2019 Feb 28;9(4):1199–1209. doi: 10.1534/g3.118.200881

Table 2. Chromosome locations of root-knot nematode (RKN) resistance determinants in cowpea accession FN-2-9-04, mapped using F2 and F2:3 populations of the cross CB46-Null x FN-2-9-04 and the F2 population of the cross CB46 x FN-2-9-04.

Pop a Trait RKN Vu Position Flanking markers -logp PVE (%) A D/A
1 34.4 2..04038-2..26991 5.4 33.0 −1.3 0.5
F2:3 RG Avr-M.i 4 24.7-27.6 2..44685-2..10583 20 73.3 −2.0 0.5
F2:3 RG M.j 1 27.7-42.0 2..47796-1.0027 20 95.1 −2.3 0.3
F2 RG M.j 1 30.3-38.7 2..32677-2..19840 20 47.3 −2.8 0.4
F2b RG M.j 1 19.2-72.9 2..53036-2..18359 20 65.9 2.7 0.8
F2 EM M.j 1 31.5-36.9 2..21671-2..07103 10.9 34.1 −17.0 0.5
F2b EM M.j 1 47.1-52.1 2..21671-2..12209 8.8 24.7 −16.4 0.4
a

Pop = mapping population; the F2:3 were phenotyped in the field whereas the F2 were phenotyped in greenhouse and growth chamber (seedling-growth pouches) screens; RG = root-galling; EM = egg-masses per root system; Avr-M.i = avirulent M. incognita isolate Beltran; M.j = M. javanica;

b

mapping population CB46 x FN-2-9-04 phenotyped for RG and EM; Vu = cowpea chromosome pseudomolecule numbering (Lonardi et al. 2017); -logp = level of significance of the detected QTL (P < 0.05); PVE = percent of total phenotypic variation explained; A = additive effect of favorable alleles from the resistant parent (negative values indicate the extent of average reduction in RG or EM production due to the presence of favorable alleles); D = dominance effect due to substitution of favorable allele; and D/A = degree of dominance.