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. Author manuscript; available in PMC: 2019 Dec 13.
Published in final edited form as: J Phys Chem B. 2018 Oct 17;122(49):11363–11372. doi: 10.1021/acs.jpcb.8b07262

Figure 3:

Figure 3:

The difference between RFRET for the base paired (H-JBP-H) control and H-J-H in (a) KCl and (b) MgCl2, where J represents either J5/5a or JU4U5. Dashed red lines mark a salt concentration above which one of the difference values remains constant. Note the RH –JBP – HRHJU4U5H does not approach a constant value at high concentration of KCl. Above 5 mM MgCl2 the H-JU4U5-H construct is 3 Å shorter than the base paired construct. This value is close to the height contributed by one base pair (2.8 Å) to an A-form RNA duplex.