Table 1. RNA-seq reads statistics.

Identifier	Raw reads	Clean reads	Error rate (%)	Q20 (%)	Q30 (%)	GC content (%)
WT1_1	95,610,695	93,512,704	0.03	97.55	94.93	45.31
WT1_2	95,610,695	93,512,704	0.03	95.82	92	45.12
WT2_1	94,235,807	91,839,851	0.03	97.56	94.95	45.29
WT2_2	94,235,807	91,839,851	0.03	96.05	92.41	45.13
T3SD1_1	89,734,396	87,172,389	0.03	97.48	94.8	45.25
T3SD1_2	89,734,396	87,172,389	0.03	95.84	92.02	45.04
T3SD2_1	94,275,426	91,687,426	0.03	97.55	94.92	44.96
T3SD2_2	94,275,426	91,687,426	0.03	95.96	92.24	44.79
NBXOC1	5,415,171	5,258,414	0.03	97.02	93.42	62.79
NBXOC2	5,415,171	5,258,414	0.04	94.55	89.47	61.94

Note: WT1_1 and WT1_2 represent one biological replicate of wild type Xoc GX01 infected leave sample WT1 sequenced by two different primers. Same as other identifiers except NBXOC1 and NBXOC2, which represent one biological replicate of wild type Xoc GX01 in rich medium culture NBXOC sequenced by two different primer.