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. 2019 Apr 17;14(4):e0215039. doi: 10.1371/journal.pone.0215039

Table 5. Differential expression of TALE target gene in Xoc infected rice leaves.

TAL effector Equivalent TALE in BLS256 Target ID T3SD FPKM WT FPKM Fold change q-Value Fold Change Mock-Xoc 96 h q (Mock-Xoc)
GX01_Tal7 BLS256_Tal6 Os01g0496900 6.09 24.84 -2.03 4.87E-03 1.53 8.00E-02
GX01_Tal7 BLS256_Tal6 Os09g0466100 0.27 2.87 -3.41 4.87E-03 1.97 3.60E-02
GX01_Tal7 BLS256_Tal6 Os12g0624900 7.1 30.2 -2.09 4.87E-03 1.65 2.20E-04
GX01_Tal8a BLS256_Tal5a Os02g0251900 0.59 36.56 -5.95 4.87E-03 4.93 4.10E-07
GX01_Tal9a BLS256_Tal4a Os03g0575200 28.6 225.37 -2.98 4.87E-03 1.96 2.20E-04
GX01_Tal9b BLS256_Tal4b Os09g0494600 0.64 5.44 -3.08 4.87E-03 2.45 8.00E-03
GX01_Tal9c BLS256_Tal4c Os06g0567200 3.24 63.16 -4.29 4.87E-03 7.15 2.70E-10
GX01_Tal10b BLS256_Tal3b Os02g0555300 0.35 6.72 -4.27 7.84E-02 5.31 4.00E-07
GX01_Tal10b BLS256_Tal3b Os05g0342100 0.27 25 -6.55 1.16E-01 4.42 3.40E-08
GX01_Tal10b BLS256_Tal3b Os07g0549100 0 3.68 -inf 4.87E-03 2.4 2.60E-02
GX01_Tal10c BLS256_Tal3c Os02g0705500 1.83 33.11 -4.18 1.00E+00 2.24 1.90E-03
GX01_Tal10c BLS256_Tal3c Os03g0171700 0.25 171.28 -9.42 1.33E-01 3.84 3.60E-02
GX01_Tal11b BLS256_Tal2c Os03g0122300 7.77 132.25 -4.09 4.87E-03 3.11 1.10E-02
GX01_Tal11c BLS256_Tal2d Os04g0581000 1.46 248.65 -7.41 4.87E-03 10.49 3.90E-07
GX01_Tal11g BLS256_Tal2g Os01g0719300 0.65 229.29 -8.45 4.87E-03 9.59 1.30E-06
GX01_Tal11g BLS256_Tal2g Os06g0678800 0.94 60.93 -6.02 4.87E-03 6.88 4.30E-08

Note: Fold change shows log2(T3SD_FPKM/WT_FPKM), represents transcript abundance in leaves inoculated with Xoc GX01 NK4122(ΔhrcC, type three secretion system defect) relative to Xoc GX01 wild type “Fold Change Mock-Xoc 96 h” data are from Cernadas et al., 2014, which represented fold change in transcript abundance at 96 h in Xoc-inoculated leaves relative to mock-inoculated leaves [17]. q-value < 5.00E-2 and |fold change| > 1 are the threshold for significant gene expression charge. OsSultr3;6 was referred as Os01g0719300 in this table.