Table 5. Differential expression of TALE target gene in Xoc infected rice leaves.
TAL effector | Equivalent TALE in BLS256 | Target ID | T3SD FPKM | WT FPKM | Fold change | q-Value | Fold Change Mock-Xoc 96 h | q (Mock-Xoc) |
---|---|---|---|---|---|---|---|---|
GX01_Tal7 | BLS256_Tal6 | Os01g0496900 | 6.09 | 24.84 | -2.03 | 4.87E-03 | 1.53 | 8.00E-02 |
GX01_Tal7 | BLS256_Tal6 | Os09g0466100 | 0.27 | 2.87 | -3.41 | 4.87E-03 | 1.97 | 3.60E-02 |
GX01_Tal7 | BLS256_Tal6 | Os12g0624900 | 7.1 | 30.2 | -2.09 | 4.87E-03 | 1.65 | 2.20E-04 |
GX01_Tal8a | BLS256_Tal5a | Os02g0251900 | 0.59 | 36.56 | -5.95 | 4.87E-03 | 4.93 | 4.10E-07 |
GX01_Tal9a | BLS256_Tal4a | Os03g0575200 | 28.6 | 225.37 | -2.98 | 4.87E-03 | 1.96 | 2.20E-04 |
GX01_Tal9b | BLS256_Tal4b | Os09g0494600 | 0.64 | 5.44 | -3.08 | 4.87E-03 | 2.45 | 8.00E-03 |
GX01_Tal9c | BLS256_Tal4c | Os06g0567200 | 3.24 | 63.16 | -4.29 | 4.87E-03 | 7.15 | 2.70E-10 |
GX01_Tal10b | BLS256_Tal3b | Os02g0555300 | 0.35 | 6.72 | -4.27 | 7.84E-02 | 5.31 | 4.00E-07 |
GX01_Tal10b | BLS256_Tal3b | Os05g0342100 | 0.27 | 25 | -6.55 | 1.16E-01 | 4.42 | 3.40E-08 |
GX01_Tal10b | BLS256_Tal3b | Os07g0549100 | 0 | 3.68 | -inf | 4.87E-03 | 2.4 | 2.60E-02 |
GX01_Tal10c | BLS256_Tal3c | Os02g0705500 | 1.83 | 33.11 | -4.18 | 1.00E+00 | 2.24 | 1.90E-03 |
GX01_Tal10c | BLS256_Tal3c | Os03g0171700 | 0.25 | 171.28 | -9.42 | 1.33E-01 | 3.84 | 3.60E-02 |
GX01_Tal11b | BLS256_Tal2c | Os03g0122300 | 7.77 | 132.25 | -4.09 | 4.87E-03 | 3.11 | 1.10E-02 |
GX01_Tal11c | BLS256_Tal2d | Os04g0581000 | 1.46 | 248.65 | -7.41 | 4.87E-03 | 10.49 | 3.90E-07 |
GX01_Tal11g | BLS256_Tal2g | Os01g0719300 | 0.65 | 229.29 | -8.45 | 4.87E-03 | 9.59 | 1.30E-06 |
GX01_Tal11g | BLS256_Tal2g | Os06g0678800 | 0.94 | 60.93 | -6.02 | 4.87E-03 | 6.88 | 4.30E-08 |
Note: Fold change shows log2(T3SD_FPKM/WT_FPKM), represents transcript abundance in leaves inoculated with Xoc GX01 NK4122(ΔhrcC, type three secretion system defect) relative to Xoc GX01 wild type “Fold Change Mock-Xoc 96 h” data are from Cernadas et al., 2014, which represented fold change in transcript abundance at 96 h in Xoc-inoculated leaves relative to mock-inoculated leaves [17]. q-value < 5.00E-2 and |fold change| > 1 are the threshold for significant gene expression charge. OsSultr3;6 was referred as Os01g0719300 in this table.