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. 2019 Apr 16;10(2):e00431-19. doi: 10.1128/mBio.00431-19

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Copyright © 2019 Cobián Güemes et al.

This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.

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FIG 4 — Actively transcribing members of the viral and bacterial communities in sputum samples of patient CF01. Metatranscriptomes from two exacerbations and two stable samples were obtained. (A) Bacterial taxonomical assignments were made using KAIJU at the genus level and are color-coded by phylum. (B) Fractional abundances of bacteriophages based on viral RefSeq mapping and FRAP normalization. (C) Fractional abundances of eukaryotic viruses based on viral RefSeq mapping and FRAP normalization. (D) Bacterial rank abundance plot, generated using relative abundances at the genus level. Evenness was calculated as H/In(S), where H is the Shannon diversity index and S is the total number of species.