| LC-MS | Liquid chromatography electrospray ionization tandem mass spectrometry |
| TMT | Tandem Mass Tag |
| KEGG | Kyoto Encyclopedia of Genes and Genomes |
| GO | Gene Ontology |
| SOS | Salt Overly Sensitive |
| ROS | Reactive oxygen species |
| PTM | post-translational modification |
| QC | Quality control |
| DPP | Differentially phosphorylated protein |
| LHCII | light-harvesting complex II |
| PsbP | photosystem II oxygen-evolving enhancer protein 2 |
| PsbH | photosystem II protein H |
| PsaD | PSI reaction center subunit II |
| PATL1 | DNA topoisomerase 2-associated protein PAT1 |
| DCP2 | mRNA-decapping enzyme subunit 2 |
| EDC4 | enhancer of mRNA-decapping protein 4 |
| CNOT2 | CCR4-NOT transcription complex subunit 2 |
| CAF16 | CCR4-NOT complex subunit 16 |
| PPI | Protein–Protein Interaction |