Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2019 Mar 1;10(3):190. doi: 10.3390/genes10030190

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© 2019 by the authors.

Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).

PMC Copyright notice

Molecular phylogenetic analysis of stem cell-related proteins. Analysis was performed using the stem cell-related protein sequences from Arabidopsis, rice, soybean, tomato, and poplar. The evolutionary history was inferred by using the maximum likelihood method based on the JTT (Jones Taylor-Thornton) matrix-based model [1]. The tree with the highest log likelihood (–34197.0000) is shown. The initial tree(s) for the heuristic search were obtained automatically by applying the neighbor-join (NJ) and BioNJ algorithms to a matrix of pairwise distances estimated using the JTT model, and then selecting the topology with a superior log likelihood value. The analysis involved 97 amino acid sequences. All of the positions with less than 95% site coverage were eliminated; that is, fewer than 5% alignment gaps, missing data, and ambiguous bases were allowed at any position, leaving only three positions in the final dataset. The evolutionary analyses were conducted in MEGA7 [2].