Table 2.
List of TFs predicted to interact with the promoter region of at least 75% of 30 homological genes of methionine sulfoxide reductase type A (MsrA) and B (MsrB) originating from the Arabidopsis thaliana (At), Populus trichocarpa (Pt), and Oryza sativa (Os) genomes. The core consensus sequence of each TF is underlined.
| TF | Consensus Sequence | Not Detected in the Promoter of |
|---|---|---|
| Protodermal factor 2 | aaattgcaaATTCtagg | OsMsrA2.2 |
| SBF-1 | ggatttagttTTAAaattt | OsMsrA2.2, OsMsrA5, OsMsrB3 |
| Homeodomain protein WUSCHEL | gacgccATTAacacgtggc | OsMsrA2.2, PtMsrA2.2, PtMsrB5 |
| Homeodomain GLABROUS 1 | cacgtgttAATGgcgtc | AtPMSR1, OsMsrA2.2, OsMsrB1 |
| TESMIN/TSO1-like CXC 2 | atcaatctctcattCAAAatctcattctctc | AtMsrB4, OsMsrA2.2, OsMsrA5, PtMsrA4 |
| KANADI | tcGAATaacaaat | AtMsrB3, OsMsrA2.2, OsMsrB3, OsMsrB5, PtMsrB3.1 |
| G2-like family protein | caatagATTCctt | OsMsrA2.2, OsMsrB1, OsMsrB3, OsMsrB5, PtMsrA4.2 |
| Stomatal Carpenter 1 (DOF5.7) | ttAGTTaacca | AtMsrB7, OsMsrA4, OsMsrB3, PtMsrA2.2, PtMsrA4.2 |
| DIVARICATA 1 | tgctcgtTATCttcagccc | AtMsrB6, OsMsrA2.1, OsMsrA2.2, OsMsrA5, OsMsrB1 |
| Trihelix transcription factor GT-1 | gaacatttgGTTAactaaa | AtMsrB4, OsMsrA2.2, OsMsrA5, OsMsrB3, OsMsrB5 |
| Transcriptional repressor BELLRINGER | tcacaaaATTAattcttct | AtMsrB2, AtMsrB5, AtPMSR4, OsMsrA2.2, OsMsrB1 |
| RAP2.2 | atATCTaacaa | AtMsrB1, AtMsrB8, OsMsrA2.2, OsMsrA5, OsMsrB1, OsMsrB3 |
| DNA-binding storekeeper protein-related transcriptional regulator (AT4G00250) | aaaattGATCcaaagct | AtMsrB2, AtMsrB6, AtMsrB7, AtPMSR3, OsMsrA2.2, PtMsrA4.1 |
| Class I GATA factors | aagatGATAaatgtgtg | AtMsrB6, AtPMSR2, OsMsrA2.2, OsMsrA5, OsMsrB1, PtMsrB5 |
| Homeobox protein 32 | tagatttaTTATttgtatc | AtPMSR1, OsMsrA2.2, OsMsrA4, OsMsrB3, OsMsrB5, PtMsrB1, PtMsrB5 |
| Myb-like protein of Petunia hybrid (ODO1) | ttaggattTAGTtttaaaatt | AtMsrB3, AtMsrB4, OsMsrA2.1, OsMsrA4, OsMsrA5, PtMsrA2.2, PtMsrB3.2 |
| Heterodimer of NAC-domain transcription factors GmNAC30 and GmNAC81 | TGTGttg | AtMsrB2, OsMsrA2.1, OsMsrA2.2, OsMsrB1, OsMsrB5, PtMsrA4.2, PtMsrB5 |
| Myb domain protein 96 MYBCOV1 | ttcgtatttAGTTaaccaaat | AtMsrB3, AtMsrB4, OsMsrA2.2, OsMsrA4, OsMsrA5, PtMsrB3.2, PtMsrB5 |
| Late elongated hypocotyl 1 | tgtgtaTATAttttgga | AtMsrA5, AtMsrB1, AtMsrB4, OsMsrA2.2, OsMsrA5, OsMsrB3, PtMsrB5 |
| Target of early activation tagged 1 (RAP2.7) | tgacATTAaaa | AtMsrB4, AtMsrB6, AtMsrB8, AtPMSR4, OsMsrA2.1, OsMsrA2.2, OsMsrB1 |
| Yabby transcription factor CRABS CLAW | aagaTGATaaatg | AtPMSR3, OsMsrA2.2, OsMsrA4, OsMsrA5, OsMsrB1, OsMsrB3, PtMsrB5 |
| AS1/AS2 repressor | gctTTGAct | AtMsrB1, AtPMSR1, OsMsrA2.2, OsMsrA4, OsMsrB1, OsMsrB3, PtMsrA4.2 |
| NAC with transmembrane motif 1-like 6 (NTL6/NTM1) | tttgttagatatatTAAGaaagg | AtMsrA5, AtMsrB2, OsMsrA2.2, OsMsrB3, OsMsrB5, PtMsrA4.2, PtMsrA5, PtMsrB3.2 |
| Storekeeper (STK), plant specific DNA binding protein | cccacaTATCcactatt | AtMsrB3, AtMsrB4, AtPMSR4, OsMsrA2.1, OsMsrA2.2, OsMsrA5, PtMsrA2.1, PtMsrB5 |
| Homeobox protein 34 | ataagactTAATgaaaaca | AtMsrA5, AtMsrB1, AtMsrB7, AtPMSR4, OsMsrA2.2, OsMsrA5, OsMsrB1, OsMsrB3 |
| bZIP protein G-Box binding factor 1 | tttcacCACGtcactgctt | AtMsrA5, AtMsrB4, AtMsrB4, AtPMSR1, OsMsrA5, OsMsrB5, PtMsrA5, PtMsrB3.1, PtMsrB5 |