Table 3.
List and number (nr) of TFs and REs predicted to interact with the promoter region of one specific MsrA or MsrB gene originating from the Arabidopsis thaliana (At), Populus trichocarpa (Pt), and Oryza sativa (Os) genomes. The predictions were made using MatInspector software, and intersections of the lists of elements were calculated while using the Venn web tool.
| Gene Name | Nr | TFs and REs |
|---|---|---|
| AtPMSR1 | 1 | NAC domain containing protein 3 (NAC3) |
| AtPMSR3 | 3 | WRKY transcription factor 8 (WRKY8), R2R3-type myb-like transcription factor IIG-type binding site (MYB0), Cooperatively regulated by ethylene and jasmonate 1 (CEJ1) |
| AtPMSR4 | 2 | Myb domain protein 116 (MYB116), RY and Sph motifs conserved in seed-specific promoters |
| AtMsrA5 | 1 | Heat stress transcription factor C-1 (HSFC1) |
| AtMsrB1 | 1 | NAC domain containing protein 45 (NAC045) |
| AtMsrB2 | 4 | Transcription factor TGA3 (TGA3), Arabidopsis NAC domain containing protein 81 (NAC081), ATAF2 WRKY transcription factor 55 (WRKY55) |
| AtMsrB6 | 1 | Indeterminate (ID)-domain 11 (IDD11) |
| AtMsrB7 | 2 | REVEILLE 5 (RVE5), Dof zinc finger protein DOF4.7 AT4G38000 (DOF4.7) |
| AtMsrB8 | 2 | Indeterminate (ID)-domain 5 protein RAVEN (IDD5), ABA-responsive element binding protein 3 (AREB3) |
| AtMsrB9 | 1 | Phytochrome-interacting fator 5 (PIL6) |
| PtMsrA2.1 | 2 | Dof zinc finger protein DOF5.1 AT5G02460 (DOF5.1), Dof zinc finger protein DOF2.2 AT2G28810 (DOF2.2) |
| PtMsrA4.1 | 1 | C-repeat-binding factor 3 (DREB1A) |
| PtMsrA4.2 | 1 | Myb domain protein 118 Plant Growth Activator 37 (MYB118) |
| PtMsrA5 | 2 | B3 domain-containing transcription factor NGA4 (NGA4), Myb domain protein 111 (MYB111) |
| PtMsrB3.1 | 2 | C-repeat-binding factor 2 (DREB1C,) Dof zinc finger protein DOF5.8 AT5G66940 (DOF5.8) |
| OsMsrA2.2 | 2 | Iron-dependent regulatory sequence, TCP class II transcription factor (BRC1) |
| OsMsrA4 | 3 | NAC domain containing protein 96 (NAC096), Ethylene-responsive transcription factor 105 (ERF105), Redox responsive transcription factor 1 (RRTF1) |
| OsMsrA5 | 8 | Ethylene-responsive transcription factor 2 (ERF2), Rice bHLH protein (bHLH39), Ethylene-responsive transcription factor 10 (ERF10), Nodulin consensus sequence 3, Ethylene-responsive transcription factor 115 (ERF115), C-repeat-binding factor 2 (DREB1B), Ethylene-responsive transcription factor 5 (ERF5), TCP domain protein 21 AT5G08330 (TCP21) |
| OsMsrB1 | 4 | Dehydration-responsive element-binding protein 2C (DREB2C), LIM domain protein binding to a PAL-box like sequence (WLIM1), E2F transcription factor 3 (E2F3), BBES1/BZR1-like protein 2 AT4G36780 (BEH2) |
| OsMsrB3 | 1 | Transcription factor TCP15 AT1G69690 (TCP15) |
| OsMsrB5 | 1 | Heat stress transcription factor A-1b (HSF3) |