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Running time (minutes) for various distributed k-mer counting algorithms, with a time limit of 10 hours
| k=28 | k=55 | |||
|---|---|---|---|---|
| Algorithm | 32GB | 125GB | 32GB | 125GB |
| FK | 23 | 82 | 38 | 119 |
| KCH | 28 | 196 | – | – |
| BioPig | 122 | Out of time | 450 | Out of time |
| ADAM | Out of mem | Out of mem | Out of mem | Out of mem |
Dash symbols represent combinations where the value of k is not supported by the algorithm
