Table 3.
Top 20 differentially abundant transcripts (DATs) enriched in Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways.
| Pathway Term | Rich Factor | q Value | Gene Number |
|---|---|---|---|
| M12_W vs. M12_CK | |||
| Photosynthesis-antenna proteins | 0.4 | 3.94 × 10−8 | 10 |
| Arginine and proline metabolism | 0.080882353 | 3.52 × 10−3 | 11 |
| alpha-Linolenic acid metabolism | 0.084745763 | 3.52 × 10−3 | 10 |
| Nitrogen metabolism | 0.116666667 | 4.51 × 10−3 | 7 |
| Photosynthesis | 0.067961165 | 6.70 × 10−2 | 7 |
| Valine, leucine and isoleucine degradation | 0.058333333 | 1.20 × 10−1 | 7 |
| Carotenoid biosynthesis | 0.065789474 | 1.67 × 10−1 | 5 |
| Cysteine and methionine metabolism | 0.044117647 | 1.67 × 10−1 | 9 |
| Tropane, piperidine and pyridine alkaloid biosynthesis | 0.076923077 | 1.67 × 10−1 | 4 |
| Porphyrin and chlorophyll metabolism | 0.057471264 | 1.77 × 10−1 | 5 |
| Lysine degradation | 0.056818182 | 1.77 × 10−1 | 5 |
| Tryptophan metabolism | 0.055555556 | 1.77 × 10−1 | 5 |
| Isoquinoline alkaloid biosynthesis | 0.085714286 | 1.77 × 10−1 | 3 |
| Plant-pathogen interaction | 0.031078611 | 1.77 × 10−1 | 17 |
| Glutathione metabolism | 0.040816327 | 1.77 × 10−1 | 8 |
| Carbon fixation in photosynthetic organisms | 0.047244094 | 1.77 × 10−1 | 6 |
| Ascorbate and aldarate metabolism | 0.052083333 | 1.77 × 10−1 | 5 |
| Limonene and pinene degradation | 0.069767442 | 2.22 × 10−1 | 3 |
| Galactose metabolism | 0.040540541 | 2.67 × 10−1 | 6 |
| Glycerolipid metabolism | 0.039735099 | 2.67 × 10−1 | 6 |
| M25_W vs. M25_CK | |||
| Photosynthesis | 0.368932039 | 4.79 × 10−20 | 38 |
| Photosynthesis—antenna proteins | 0.68 | 3.55 × 10−12 | 17 |
| Carbon fixation in photosynthetic organisms | 0.204724409 | 5.17 × 10−9 | 26 |
| Nitrogen metabolism | 0.233333333 | 1.75 × 10−5 | 14 |
| Glyoxylate and dicarboxylate metabolism | 0.141732283 | 2.25 × 10−4 | 18 |
| Valine, leucine and isoleucine degradation | 0.141666667 | 3.28 × 10−4 | 17 |
| Arginine and proline metabolism | 0.132352941 | 3.68 × 10− | 18 |
| Porphyrin and chlorophyll metabolism | 0.16091954 | 3.79 × 10−4 | 14 |
| Fatty acid degradation | 0.094339623 | 3.23 × 10−2 | 15 |
| Ubiquinone and other terpenoid-quinone biosynthesis | 0.11 | 3.54 × 10−2 | 11 |
| Cysteine and methionine metabolism | 0.083333333 | 4.67 × 10−2 | 17 |
| Ascorbate and aldarate metabolism | 0.104166667 | 6.19 × 10−2 | 10 |
| Pentose phosphate pathway | 0.093023256 | 6.19 × 10−2 | 12 |
| Tryptophan metabolism | 0.1 | 9.74 × 10−2 | 9 |
| Carotenoid biosynthesis | 0.105263158 | 1.0 × 10−1 | 8 |
| Glycine, serine and threonine metabolism | 0.077419355 | 1.63 × 10−1 | 12 |
| Tyrosine metabolism | 0.093023256 | 1.63 × 10−1 | 8 |
| Alanine, aspartate and glutamate metabolism | 0.085714286 | 1.73 × 10−1 | 9 |
| Peroxisome | 0.069444444 | 1.73 × 10−1 | 15 |
| beta-Alanine metabolisma | 0.075757576 | 2.33 × 10−1 | 10 |