Table 5.
Differentially abundant transcripts both at proteomic and transcriptomic levels in M25 under waterlogging.
| Protein Accession | Protein Description | MW (kDa) | M25W/M25CK Ratio | M25W/M25CK p-Value | Protein LOG2 M25W/M25CK | Regulation | Transcription LOG2 M25W/M25CK | p adj | Regulation | Type |
|---|---|---|---|---|---|---|---|---|---|---|
| Cluster-1252.18690_orf1 | Unknown | 42.266 | 1.345 | 4.7545 × 10−2 | 0.427606173 | Up | 2.7094 | 1.029 × 10−14 | Up | Up-Up |
| Cluster-1252.25469_orf1 | Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1 | 26.335 | 2.541 | 1.12492 × 10−3 | 1.345396375 | Up | 1.7162 | 7.0349 × 10−27 | Up | Up-Up |
| Cluster-1252.27678_orf1 | Cinnamoyl-CoA reductase 2 OS=Arabidopsis thaliana GN=CCR2 PE=1 SV=1 | 37.481 | 1.36 | 3.5464 × 10−3 | 0.443606651 | Up | 3.4894 | 1.0739 × 10−7 | Up | Up-Up |
| Cluster-1252.32933_orf1 | Probable cinnamyl alcohol dehydrogenase OS=Medicago sativa GN=CAD2 PE=1 SV=1 | 40.598 | 1.336 | 3.82 × 10−4 | 0.417920008 | Up | 1.0817 | 2.6648 × 10−7 | Up | Up-Up |
| Cluster-1252.33343_orf1 | “Ornithine aminotransferase, mitochondrial OS=Arabidopsis thaliana GN=DELTA-OAT PE=1 SV=1” | 51.439 | 1.813 | 3.3792 × 10−8 | 0.858378925 | Up | 2.6159 | 1.0261 × 10−81 | Up | Up-Up |
| Cluster-1252.35478_orf1 | Unknown | 46.282 | 1.401 | 1.0601 × 10−9 | 0.486456956 | Up | 1.59 | 1.3747 × 10−13 | Up | Up-Up |
| Cluster-1252.36163_orf1 | Expansin-like B1 OS=Arabidopsis thaliana GN=EXLB1 PE=2 SV=2 | 30.779 | 2.054 | 1.2356 × 10−2 | 1.038436182 | Up | 2.62 | 1.3061 × 10−10 | Up | Up-Up |
| Cluster-1252.36198_orf1 | Cytochrome b5 OS=Brassica oleracea var. botrytis GN=CYB5 PE=1 SV=1 | 17.483 | 1.312 | 1.59783 × 10−4 | 0.39176772 | Up | 1.1567 | 2.1863 × 10−10 | Up | Up-Up |
| Cluster-1252.38004_orf2 | Protein C2-DOMAIN ABA-RELATED 9 OS=Arabidopsis thaliana GN=CAR9 PE=2 SV=1 | 21.642 | 1.651 | 6.0141 × 10−5 | 0.72334012 | Up | 1.2091 | 4.96 × 10−7 | Up | Up-Up |
| Cluster-1252.39652_orf1 | 18 kDa seed maturation protein OS=Glycine max GN=GMPM1 PE=2 SV=1 | 12.611 | 2.227 | 4.7834 × 10−3 | 1.155101558 | Up | 1.393 | 1.1811 × 10−4 | Up | Up-Up |
| Cluster-1252.42092_orf1 | Desiccation protectant protein Lea14 homolog OS=Glycine max PE=2 SV=1 | 51.585 | 1.35 | 1.00421 × 10−3 | 0.432959407 | Up | 1.8427 | 4.6211 × 10−8 | Up | Up-Up |
| Cluster-1252.42169_orf1 | 4-hydroxyphenylpyruvate dioxygenase OS=Arabidopsis thaliana GN=HPD PE=1 SV=2 | 59.596 | 1.838 | 3.7081 × 10−5 | 0.878136767 | Up | 2.1711 | 3.1841 × 10−81 | Up | Up-Up |
| Cluster-1252.42520_orf1 | ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=2 SV=2 | 194.56 | 1.426 | 1.39367 × 10−2 | 0.511973982 | Up | 1.1124 | 7.8224 × 10−50 | Up | Up-Up |
| Cluster-1252.42642_orf1 | Unknown | 16.163 | 2.542 | 1.56475 × 10−12 | 1.34596403 | Up | 2.1592 | 1.2647 × 10−37 | Up | Up-Up |
| Cluster-1252.42962_orf1 | Aldo-keto reductase family 4 member C9 OS=Arabidopsis thaliana GN=AKR4C9 PE=1 SV=1 | 36.025 | 1.711 | 1.11022 × 10−16 | 0.77483976 | Up | 1.6703 | 1.2377 × 10−41 | Up | Up-Up |
| Cluster-1252.43664_orf1 | Cinnamoyl-CoA reductase 1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1 | 34.902 | 2.885 | 1.0 × 10−32 | 1.528571319 | Up | 1.0253 | 4.2827 × 10−31 | Up | Up-Up |
| Cluster-1252.43700_orf1 | Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV=1 | 148.25 | 2.293 | 7.1779 × 10−4 | 1.197236355 | Up | 1.497 | 1.8971 × 10−177 | Up | Up-Up |
| Cluster-1252.43923_orf1 | “Crocetin glucosyltransferase, chloroplastic OS=Gardenia jasminoides GN=UGT75L6 PE=1 SV=1” | 54.447 | 1.499 | 1.80426 × 10−4 | 0.584000383 | Up | 1.3321 | 1.6138 × 10−5 | Up | Up-Up |
| Cluster-1252.44444_orf1 | Malonate-CoA ligase OS=Arabidopsis thaliana GN=AAE13 PE=1 SV=1 | 69.952 | 1.312 | 1.37048 × 10−4 | 0.39176772 | Up | 1.9792 | 1.2674 × 10−22 | Up | Up-Up |
| Cluster-1252.45456_orf1 | Copper transport protein CCH OS=Arabidopsis thaliana GN=CCH PE=1 SV=1 | 15.409 | 2.06 | 2.3795 × 10−2 | 1.042644337 | Up | 1.0154 | 4.6715 × 10−3 | Up | Up-Up |
| Cluster-1252.45489_orf1 | Unknown | 87.568 | 1.487 | 9.5623 × 10−4 | 0.572404647 | Up | 1.0995 | 7.6879 × 10−12 | Up | Up-Up |
| Cluster-1252.46922_orf1 | Aldehyde dehydrogenase family 7 member A1 OS=Pisum sativum PE=1 SV=3 | 54.83 | 1.407 | 4.1199 × 10−7 | 0.492622329 | Up | 2.4112 | 1.3416 × 10−169 | Up | Up-Up |
| Cluster-1252.47893_orf1 | Unknown | 42.991 | 1.503 | 7.1367 × 10−3 | 0.587845009 | Up | 2.4434 | 1.0982 × 10−38 | Up | Up-Up |
| Cluster-1252.48706_orf1 | Delta-1-pyrroline-5-carboxylate synthase OS=Oryza sativa subsp. japonica GN=P5CS PE=2 SV=2 | 82.353 | 2.771 | 2.0696 × 10−7 | 1.470406711 | Up | 6.2581 | 7.2562 × 10−296 | Up | Up-Up |
| Cluster-1252.49757_orf2 | Unknown | 28.735 | 1.329 | 1.89241 × 10−2 | 0.410341105 | Up | 1.6066 | 2.6525 × 10−10 | Up | Up-Up |
| Cluster-1252.49800_orf1 | β-galactosidase 8 OS=Arabidopsis thaliana GN=BGAL8 PE=2 SV=2 | 65.645 | 1.349 | 1.14055 × 10−3 | 0.431890348 | Up | 4.143 | 1.8906 × 10−80 | Up | Up-Up |
| Cluster-1252.50314_orf1 | 1-aminocyclopropane-1-carboxylate oxidase homolog 5 OS=Arabidopsis thaliana GN=2A6 PE=2 SV=2 | 47.587 | 2.728 | 1.66533 × 10−15 | 1.447843644 | Up | 3.2213 | 3.1324 × 10−40 | Up | Up-Up |
| Cluster-1252.53143_orf1 | “1,4-α-glucan-branching enzyme 1, chloroplastic/amyloplastic (Fragment) OS=Pisum sativum GN=SBEII PE=1 SV=1” | 98.938 | 1.681 | 3.2469 × 10−6 | 0.749319725 | Up | 1.6874 | 7.8729 × 10−7 | Up | Up-Up |
| Cluster-1252.62468_orf1 | Unknown | 107.76 | 6.211 | 2.2964 × 10−5 | 2.634825568 | Up | 4.7334 | 5.8563 × 10−42 | Up | Up-Up |
| Cluster-1252.65950_orf1 | Galactinol-sucrose galactosyltransferase OS=Pisum sativum GN=RFS PE=1 SV=1 | 90.573 | 1.73 | 1.9153 × 10−10 | 0.790772038 | Up | 2.7024 | 3.5766 × 10−5 | Up | Up-Up |
| Cluster-1252.38137_orf1 | “Superoxide dismutase [Cu-Zn], chloroplastic OS=Medicago sativa GN=SODCP PE=2 SV=1” | 24.007 | 0.76 | 3.2114 × 10−4 | −0.395928676 | Down | −3.946 | 5.8488 × 10−29 | Down | Down-Down |
| Cluster-1252.40018_orf1 | “CBS domain-containing protein CBSX3, mitochondrial OS=Arabidopsis thaliana GN=CBSX3 PE=1 SV=1” | 26.605 | 0.752 | 1.1475 × 10−11 | −0.411195433 | Down | −1.274 | 3.2125 × 10−18 | Down | Down-Down |
| Cluster-1252.40357_orf1 | Unknown | 23.476 | 0.658 | 9.9921 × 10−4 | −0.603840511 | Down | −1.2781 | 3.4128 × 10−4 | Down | Down-Down |
| Cluster-1252.40636_orf1 | 1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1 | 39.544 | 0.544 | 3.9251 × 10−5 | −0.878321443 | Down | −1.0541 | 5.7398 × 10−15 | Down | Down-Down |
| Cluster-1252.42669_orf1 | “50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2” | 27.445 | 0.737 | 1.39429 × 10−2 | −0.440263476 | Down | −1.1371 | 9.5976 × 10−9 | Down | Down-Down |
| Cluster-1252.43155_orf1 | “30S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum GN=RPS17 PE=2 SV=1” | 19.162 | 0.764 | 4.0527 × 10−5 | −0.388355457 | Down | −1.3192 | 2.386 × 10−7 | Down | Down-Down |
| Cluster-1252.43183_orf1 | Protein TSS OS=Arabidopsis thaliana GN=TSS PE=1 SV=1 | 180.86 | 0.718 | 4.32987 × 10−15 | −0.477944251 | Down | −1.2443 | 3.8189 × 10−29 | Down | Down-Down |
| Cluster-1252.43187_orf1 | “Thiamine thiazole synthase 2, chloroplastic OS=Vitis vinifera GN=THI1-2 PE=3 SV=1” | 41.382 | 0.63 | 1.0979 × 10−7 | −0.666576266 | Down | −1.5012 | 3.85 × 10−204 | Down | Down-Down |
| Cluster-1252.43232_orf1 | “Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1” | 40.321 | 0.705 | 5.9396 × 10−8 | −0.504304837 | Down | −1.5008 | 4.5918 × 10−20 | Down | Down-Down |
| Cluster-1252.43303_orf1 | “Ferredoxin--nitrite reductase, chloroplastic OS=Betula pendula GN=NIR1 PE=2 SV=1” | 69.24 | 0.482 | 1.0 × 10−32 | −1.052894948 | Down | −1.6604 | 1.2831 × 10−26 | Down | Down-Down |
| Cluster-1252.43381_orf1 | Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os12g0628600 PE=1 SV=1 | 20.658 | 0.707 | 3.3377 × 10−2 | −0.50021788 | Down | −2.7087 | 1.6235 × 10−50 | Down | Down-Down |
| Cluster-1252.43480_orf1 | “Protochlorophyllide reductase, chloroplastic OS=Pisum sativum GN=3PCR PE=1 SV=1” | 43.178 | 0.503 | 4.6423 × 10−9 | −0.991369695 | Down | −1.7186 | 7.5419 × 10−93 | Down | Down-Down |
| Cluster-1252.43489_orf1 | “Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1” | 66.112 | 0.679 | 1.0 × 10−32 | −0.55851652 | Down | −1.0004 | 3.72 × 10−8 | Down | Down-Down |
| Cluster-1252.43517_orf1 | “Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Euphorbia esula GN=CRD1 PE=3 SV=1” | 48.801 | 0.633 | 1.9456 × 10−10 | −0.659722595 | Down | −1.5422 | 1.5614 × 10−85 | Down | Down-Down |
| Cluster-1252.43550_orf1 | β-galactosidase 1 OS=Arabidopsis thaliana GN=BGAL1 PE=2 SV=1 | 93.798 | 0.442 | 2.3143 × 10−5 | −1.177881725 | Down | −1.9732 | 1.0767 × 10−53 | Down | Down-Down |
| Cluster-1252.43873_orf1 | “Light-harvesting complex-like protein 3 isotype 1, chloroplastic OS=Arabidopsis thaliana GN=LIL3.1 PE=1 SV=1” | 29.313 | 0.761 | 1.4038 × 10−6 | −0.394031641 | Down | −1.6761 | 3.8258 × 10−18 | Down | Down-Down |
| Cluster-1252.43934_orf1 | “Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1” | 27.699 | 0.746 | 1.28296 × 10−3 | −0.422752464 | Down | −1.6188 | 2.6379 × 10−10 | Down | Down-Down |
| Cluster-1252.44318_orf1 | Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA PE=3 SV=1 | 102.62 | 0.573 | 2.1975 × 10−4 | −0.803392956 | Down | −1.7715 | 2.6347 × 10−42 | Down | Down-Down |
| Cluster-1252.45201_orf2 | “Magnesium-chelatase subunit ChlI, chloroplastic OS=Glycine max GN=CHLI PE=2 SV=1” | 47.591 | 0.681 | 1.8359 × 10−11 | −0.554273297 | Down | −1.8322 | 5.4646 × 10−38 | Down | Down-Down |
| Cluster-1252.45508_orf1 | “Porphobilinogen deaminase, chloroplastic OS=Pisum sativum GN=HEMC PE=1 SV=1” | 45.052 | 0.665 | 1.0314 × 10−12 | −0.588573754 | Down | −1.0198 | 2.5422 × 10−3 | Down | Down-Down |
| Cluster-1252.46447_orf1 | “Magnesium protoporphyrin IX methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=CHLM PE=1 SV=1” | 39.446 | 0.724 | 2.9589 × 10−4 | −0.465938398 | Down | −3.5109 | 3.9122 × 10−25 | Down | Down-Down |
| Cluster-1252.47724_orf1 | Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE=2 SV=1 | 30.865 | 0.753 | 1.58697 × 10−5 | −0.40927823 | Down | −1.5366 | 4.9784 × 10−7 | Down | Down-Down |
| Cluster-1252.48703_orf1 | “Glutamyl-tRNA reductase 1, chloroplastic OS=Cucumis sativus GN=HEMA1 PE=2 SV=1” | 59.248 | 0.541 | 5.1604 × 10−3 | −0.886299501 | Down | −1.1181 | 2.0974 × 10−5 | Down | Down-Down |
| Cluster-1252.48945_orf1 | Unknown | 40.668 | 0.611 | 7.1715 × 10−11 | −0.710755715 | Down | −3.236 | 6.0036 × 10−22 | Down | Down-Down |
| Cluster-1252.49560_orf1 | “Probable plastid-lipid-associated protein 8, chloroplastic OS=Arabidopsis thaliana GN=PAP8 PE=1 SV=1” | 168.8 | 0.755 | 3.6428 × 10−4 | −0.40545145 | Down | −1.072 | 1.7811 × 10−6 | Down | Down-Down |
| Cluster-1252.51383_orf1 | “50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana GN=RPL29 PE=1 SV=1” | 20 | 0.756 | 1.67585 × 10−3 | −0.40354186 | Down | −1.6621 | 2.8565 × 10−8 | Down | Down-Down |
| Cluster-1252.59847_orf1 | ATP sulfurylase 2 OS=Arabidopsis thaliana GN=APS2 PE=1 SV=1 | 57.663 | 0.633 | 1.8719 × 10−7 | −0.659722595 | Down | −1.5753 | 1.7315 × 10−3 | Down | Down-Down |