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. 2019 Mar 1;19(5):3871–3881. doi: 10.3892/mmr.2019.10001

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Copyright: © Wu et al.

This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.

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Figure 1. — Bioinformatics pipeline for next-generation sequencing. BAM, Binary Alignment Map data format; DEGs, differentially expressed genes; DESeq2, differential expression sequencing; GO, Gene Ontology; hg38, human reference genome; HISAT2, hierarchical indexing for spliced alignment of transcripts; HTSeq, high-throughput sequencing; KEGG, Kyoto Encyclopedia of Genes and Genomes; PPI, protein-protein interaction; SAM, Sequence Alignment Map data format; SAR, Sequence Read Archive; UCSC, University of California Santa Cruz.