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. Author manuscript; available in PMC: 2019 Apr 18.
Published in final edited form as: J Comput Aided Mol Des. 2016 Sep 30;31(1):107–118. doi: 10.1007/s10822-016-9965-5

Table 1.

Absolute binding free energy values for OAH-guest and OAMe-guest complexes (in kcal mol−1)

Complex ΔGbindTI ΔGbindTIps ΔGbindHBAR ΔGbindHBARps ΔGbindHBARps1 ΔGbindHBARps2 ΔGbindall ΔGbindITC ΔGbindNMR ΔGbindave
OAH–G1 −7.6 ± 0.7 −4.5 ± 0.6 −6.4 ± 0.7 −4.5 ± 0.2 −4.2 ± 1.0 −4.5 ± 0.2 −3.4 ± 1.1 −5.40 −5.05 −5.22
OAH–G2 −2.7 ± 0.7 −2.7 ± 0.7 −3.2 ± 0.2 −3.2 ± 0.2 −2.2 ± 0.2 −3.2 ± 0.2 −2.7 ± 0.3 −4.73 −4.26 −4.49
OAH–G3 −4.8 ± 1.1 −4.5 ± 1.2 −3.4 ± 0.0 −3.4 ± 0.0 −3.4 ± 0.0 −3.4 ± 0.0 −4.0 ± 0.5 −4.50 −5.07 −4.78
OAH–G4 −8.1 ± 1.5 −7.8 ± 1.3 −5.0 ± 0.1 −5.0 ± 0.1 −5.0 ± 0.1 −4.4 ± 0.5 −5.5 ± 1.1 −9.38 −9.38
OAH–G5 −1.7 ± 0.1 −1.6 ± 0.5 −1.7 ± 0.1 −1.6 ± 0.5 −1.6 ± 0.5 −1.6 ± 0.5 −1.6 ± 0.5 −3.73 −4.51 −4.12
OAH–G6 −4.9 ± 1.5 −4.9 ± 1.5 −4.1 ± 0.1 −4.1 ± 0.1 −4.1 ± 0.1 −4.1 ± 0.1 −4.5 ± 0.2 −5.34 −4.91 −5.12
RMSD* 1.6 1.4 2.2 2.2 2.3 2.4 2.1
r* 0.7 0.9 0.4 0.7 0.7 0.5 0.8
τ* 1.0 0.8 0.8 1.0 1.0 0.8 0.7
OAMe–G1 −6.1 ± 0.9 −4.2 ± 0.8 −6.4 ± 0.7 −6.4 ± 0.7 −4.2 ± 0.4 −4.2 ± 0.0 −3.7 ± 0.5 −5.47 −5.25 −5.36
OAMe–G2 −7.1 ± 0.6 −7.1 ± 0.6 −5.3 ± 0.3 −5.3 ± 0.3 −5.3 ± 0.3 −4.7 ± 0.3 −6.1 ± 1.1 −5.26 −5.05 −5.15
OAMe–G3 −6.5 ± 1.5 −6.5 ± 1.5 −6.5 ± 1.5 −6.5 ± 1.5 −6.5 ± 1.5 −6.5 ± 1.5 −6.5 ± 1.5 −5.74 −5.96 −5.85
OAMe–G4 −9.9 ± 2.4 −9.9 ± 2.4 −10.5 ± 1.0 −10.5 ± 1.0 −10.5 ± 1.0 −6.6 ± 0.3 −7.8 ± 1.2 −2.38 −2.38
OAMe–G5 −2.6 ± 0.6 −2.6 ± 0.6 −2.9 ± 0.7 −2.9 ± 0.7 −2.6 ± 0.6 −2.6 ± 0.6 −2.6 ± 0.6 −3.91 −3.91
OAMe–G6 −7.0 ± 0.3 −7.0 ± 0.3 −7.0 ± 0.3 −7.0 ± 0.3 −7.0 ± 0.3 −5.3 ± 1.0 −6.0 ± 0.5 −4.52 −4.45 −4.48
RMSD* 3.4 3.4 3.5 3.5 3.5 1.9 2.5
r* −0.3 −0.4 −0.4 −0.4 −0.5 0.0 −0.2
τ* −0.2 −0.2 0.0 0.0 −0.2 0.0 0.0
MSD** −1.2 −0.7 −0.6 −0.5 −0.1 0.3 0.0
MAD** 2.3 2.2 2.3 2.3 2.4 1.9 2.2
RMSDtot ** 3.1 3.0 3.2 3.1 3.2 2.4 2.7

Rows 2–7 pertain to OAH-guest complexes and rows 9–14 correspond to OAMe-guest complexes. We included the root mean square deviation for each set (RMSD), the overall mean signed deviation (MSD) and mean absolute deviation (MAD) and the root mean square deviation for each method (RMSDtot)

Average experimental value from ITC and NMR experiments. The NMR data are missing the OAH-G4 binding free energy, and the ITC data are missing OAMe-G4 and OAMe-G5 binding free energies

*

RMSD, Pearson’s coefficient (r) and Kendall rank coefficient (τ) computed with respect to the average of the two experimental sets

**

MSD, MAD and RMSDtot computed with respect to the average of the two experimental sets