ADMM	alternating direction method of multipliers
AML	acute myeloid leukemia
ARMI	assisted robust marker identification
AUC	area under the curve
BRCA	breast cancer dataset
BXD	murine liver dataset
CCA	canonical correlation analysis
CD	coordinate descent
CIA	co-inertia analysis
CNV	copy number variation
COAD	colon adenocarcinoma
EM	expectation–maximization
GBM	glioblastoma
GE	gene expression
GWAS	whole genome association study
JIVE	the joint and individual variation explained
KIRC	kidney renal clear cell carcinoma
LAD	least absolute deviation
LASSO	least absolute shrinkage and selection operator
LDA	linear discriminant analysis
LIHC	liver hepatocellular carcinoma
LPP	locality preserving projections
LRMs	linear regulatory modules
LUSC	lung squamous cell carcinoma
MALA	microarray logic analyzer
MCCA	multiple canonical correlation analysis
MCIA	multiple co-inertia analysis
MCMC	Markov chain Monte Carlo
MCP	minimax concave penalty
MDI	multiple dataset integration
MFA	multiple factor analysis
NMF	non-negative matrix factorization
OV	ovarian cancer
PCA	principle component analysis
PINS	perturbation clustering for data integration and disease subtyping
PLS	partial least squares
rMKL	robust multiple kernel learning
SARC	Sarcoma Alliance for Research through Collaboration
SCAD	smoothly clipped absolute deviation
SKCM	skin cutaneous melanoma
SNF	similarity network fusion
SNP	single nucleotide polymorphism
TCGA	The Cancer Genome Atlas