Table 1.
Chitinase genes identified in tomato. Mw/Kda means molecular weight (kilodalton). GRAVY stands for the grand average of hydropathy. S, C, and M mean secretory pathway, chloroplast, and mitochondrion, respectively, in TargetP localization.
| Gene ID | Chrome Location | Length | Mw/Kda | pI | GRAVY | Domains | TargetP Localization |
|---|---|---|---|---|---|---|---|
| Solyc01g095250.1 | ch01:86587643..86588539 (+) | 298 | 31.91 | 4.51 | −0.022 | GH18 | S (0.995) |
| Solyc01g095260.1 | ch01:86590501..86591397 (+) | 298 | 31.95 | 4.41 | −0.019 | GH18 | S (0.993) |
| Solyc01g095310.1 | ch01:86626834..86627742 (+) | 302 | 32.35 | 5.34 | −0.05 | GH18 | S (0.994) |
| Solyc01g097270.2 | ch01:88179851..88181214 (−) | 212 | 22.69 | 8.36 | −0.295 | GH19 | S (0.910) |
| Solyc01g097280.2 | ch01:88183566..88184361 (−) | 199 | 21.49 | 8.78 | −0.37 | GH19 | S (0.959) |
| Solyc02g061770.2 | ch02:33290113..33291907 (+) | 263 | 28.52 | 8.69 | −0.17 | GH19 | S (0.953) |
| Solyc02g082920.2 | ch02:46550982..46552140 (+) | 253 | 27.63 | 5.93 | −0.265 | GH19 | S (0.988) |
| Solyc02g082930.2 | ch02:46554240..46555813 (+) | 247 | 26.58 | 4.68 | −0.228 | GH19 | S (0.841) |
| Solyc02g082960.2 | ch02:46564405..46566106 (+) | 273 | 30.14 | 9.56 | −0.194 | GH19 | S (0.887) |
| Solyc03g116190.1 | ch03:65691845..65692213 (−) | 122 | 13.98 | 8.09 | −0.202 | GH19 | S (0.896) |
| Solyc03g116230.2 | ch03:65723988..65725192 (−) | 295 | 30.59 | 5.38 | −0.196 | GH19 | S (0.982) |
| Solyc03g116240.2 | ch03:65733982..65736687 (−) | 87 | 9.26 | 4.94 | 0.526 | GH19 | S (0.985) |
| Solyc04g072000.2 | ch04:59066373..59068261 (−) | 276 | 30.01 | 4.58 | −0.294 | GH19 | S (0.994) |
| Solyc05g050130.2 | ch05:60108919..60110761 (−) | 292 | 31.26 | 8.46 | 0.087 | GH18 | S (0.972) |
| Solyc06g053380.2 | ch06:36128793..36130489 (−) | 289 | 31.81 | 5.37 | −0.284 | GH19 | S (0.977) |
| Solyc07g005080.1 | ch07:112239..113536 (+) | 386 | 41.83 | 4.82 | −0.125 | GH18 | Other (0.554); C (0.337) |
| Solyc07g005090.2 | ch07:113980..115328 (−) | 371 | 41.51 | 8.66 | −0.111 | GH18 | S (0.899) |
| Solyc07g005100.2 | ch07:123941..126335 (+) | 376 | 41.85 | 9.34 | −0.271 | GH18 | S (0.951) |
| Solyc07g009500.1 | ch07:4618503..4618766 (+) | 87 | 9.49 | 8.36 | −0.298 | GH19 | S (0.704) |
| Solyc07g009510.1 | ch07:4622506..4622769 (+) | 87 | 9.49 | 8.36 | −0.298 | GH19 | S (0.704) |
| Solyc07g009530.1 | ch07:4681799..4681990 (+) | 63 | 6.49 | 7.48 | 0.733 | GH19 | S (0.995) |
| Solyc07g026990.1 | ch07:32915139..32915324 (−) | 61 | 7.43 | 7.77 | −0.387 | GH19 | Other (0.784) |
| Solyc09g098540.2 | ch09:72338607..72340235 (−) | 319 | 35.56 | 7.95 | −0.205 | GH19 | S (0.964) |
| Solyc10g017970.1 | ch10:6248916..6249098 (−) | 60 | 6.17 | 5.57 | 0.497 | GH19 | S (0.992) |
| Solyc10g017980.1 | ch10:6273805..6273996 (+) | 63 | 6.56 | 7.48 | 0.471 | GH19 | S (0.995) |
| Solyc10g055790.1 | ch10:57408394..57408612 (−) | 72 | 7.72 | 7.51 | 0.408 | GH19 | S (0.976) |
| Solyc10g055800.1 | ch10:57410647..57411787 (−) | 329 | 35.41 | 8.64 | −0.423 | GH19 | S (0.838) |
| Solyc10g055810.1 | ch10:57417284..57418434 (−) | 322 | 34.35 | 6.19 | −0.248 | GH19 | S (0.989) |
| Solyc10g055820.1 | ch10:57435941..57437097 (−) | 322 | 34.89 | 6.36 | −0.348 | GH19 | S (0.975) |
| Solyc10g068350.1 | ch10:65525076..65525336 (−) | 86 | 9.23 | 7.65 | −0.494 | GH19 | Other (0.600); C (0.419) |
| Solyc10g074360.1 | ch10:57700740..57701259 (−) | 154 | 17.16 | 8.51 | −0.161 | GH19 | Other (0.677); M (0.523) |
| Solyc10g074380.1 | ch10:57722610..57722870 (−) | 64 | 7.19 | 9.6 | −1.008 | GH19 | Other (0.504); C (0.363) |
| Solyc10g074390.1 | ch10:57732393..57733097 (−) | 216 | 22.81 | 8.47 | −0.315 | GH19 | S (0.964) |
| Solyc10g074400.1 | ch10:57738774..57739374 (−) | 173 | 18.43 | 9.11 | −0.381 | GH19 | S (0.436); M (0.435) |
| Solyc10g074460.1 | ch10:57954087..57956593 (−) | 194 | 20.89 | 8.36 | −0.132 | GH19 | S (0.966) |
| Solyc11g005890.1 | ch11:710226..711943 (−) | 295 | 33.33 | 5.7 | −0.052 | GH18 | S (0.876) |
| Solyc11g020130.1 | ch11:10197594..10198487 (+) | 163 | 17.39 | 7.75 | −0.111 | GH19 | S (0.995) |
| Solyc11g020450.1 | ch11:11116611..11117328 (−) | 206 | 22.18 | 8.17 | −0.675 | GH19 | M (0.368) |
| Solyc11g020530.1 | ch11:11364445..11364994 (−) | 167 | 18.29 | 8.47 | −0.499 | GH19 | M (0.470) |
| Solyc11g072750.1 | ch11:55960411..55961439 (−) | 342 | 38.89 | 6.89 | −0.139 | GH18 | M (0.597) |
| Solyc11g072760.1 | ch11:55962509..55963429 (−) | 306 | 34.63 | 6.29 | −0.037 | GH18 | S (0.909) |
| Solyc11g072830.1 | ch11:56024533..56025453 (+) | 306 | 33.74 | 4.79 | −0.15 | GH18 | S (0.974) |
| Solyc12g098810.1 | ch12:66187159..66189951 (+) | 328 | 36.44 | 6.32 | −0.242 | GH19 | S (0.962) |