Table 1.
Organismal/morphological complexity correlates with the proportion of transcriptional regulators within each kingdom when the evolutionary distance between organisms is high.
Kingdom | Species | No. of cell types | Genome size | No. of genes | No. of TFs | Proportion of TFs |
---|---|---|---|---|---|---|
Metazoa | Homo sapiens | 264.5 | ∼ 3.3 GB | ∼ 22997 | ∼ 1508 | 0.0656 |
Mus musculus | 130.5 | ∼ 2.7 GB | ∼ 23873 | ∼ 1426 | 0.0597 | |
Tetraodon nigroviridis | 119.5 | ∼ 390 MB | ∼ 27991 | ∼ 1362 | 0.0487 | |
Drosophila melanogaster | 59 | ∼ 175 MB | ∼ 14141 | ∼ 601 | 0.0425 | |
Caenorhabditis elegans | 28.5 | ∼ 100 MB | ∼ 20140 | ∼ 698 | 0.0347 | |
Nematostella vectensis | 22 | ∼ 450 MB | ∼ 27273 | ∼ 701 | 0.0257 | |
Trichoplax adhaerens | 4 | ∼ 50 MB | ∼ 11520 | ∼ 233 | 0.0202 | |
Viridiplantae | Zea mays | 100 | ∼ 2.5 GB | ∼ 45796 | ∼ 2689 | 0.0587 |
Arabidopsis thaliana | 27.25 | ∼ 135 MB | ∼ 27235 | ∼ 1356 | 0.0498 | |
Selaginella moellendorffii | 25 | ∼ 100 MB | ∼ 22273 | ∼ 665 | 0.0299 | |
Physcomitrella patens | 21 | ∼ 480 MB | ∼ 35938 | ∼ 823 | 0.0229 | |
Marchantia Polymorpha | NA∗ | ∼ 225 MB | ∼ 32718 | ∼ 586 | 0.0179 | |
Klebsormidium nitens | 1 | ∼ 117 MB | ∼ 16215 | ∼ 273 | 0.0168 | |
Chlamydomonas reinhardtii | 1 | ∼ 107 MB | ∼ 15256 | ∼ 213 | 0.0140 | |
Chlorella sp. NC64A | 1 | ∼ 46.2 MB | ∼ 9791 | ∼ 131 | 0.0134 | |
The arrangement of organisms within each kingdom is based on organismal complexity. Proportion of transcriptional factors (TFs) represents the ratio of number of TFs to number of genes. Data were mostly obtained from transcription factor prediction database, only the longest transcript per gene was included in this study (http://www.transcriptionfactor.org) (Valentine et al., 1994; Bell and Mooers, 1997; McCarthy and Enquist, 2005; Vogel and Chothia, 2006; Charoensawan et al., 2010b; Burdo et al., 2014; Chen et al., 2014; Hori et al., 2014; Matsumoto et al., 2016; Jiao et al., 2017). ∗NA, not available.