REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Bacterial Strains | ||
Saccharomyces cerevisiae DBY745 | Worland and Wang, 1989 | N/A |
Chemicals and Recombinant Proteins | ||
mPEG-Succinimidyl Valerate, MW5000 | Laysan Bio Inc. | mPEG-SVA-5000 |
Biotin-PEG-SVA, MW5000 | Laysan Bio Inc. | Biotin-PEG-SVA-5000 |
Streptavidin | Thermo Fisher | S888 |
Cy3/Cy5 NHS Ester | GE Healthcare | PA13101 / PA15101 |
D-(+)-Glucose | Sigma | G7528-250G |
Trolox | Sigma | 238813-1G |
Glucose oxidase | Sigma | G2133-50KU |
Catalase | Sigma | C100-50MG |
Oligonucleotides | ||
Yclv1 for enzyme assay AGCGGTATCAGCAGGATGACGATGCGCGCATCGTCATCCTACAGAATCAGTTTTTTTTTTTTTTTT |
Integrated DNA Technology (IDT) | N/A (custom) |
Yclv2 for enzyme assay AGCGGTATCAGCAATCTAACAATGCGCGCATTGTTAGATTACAGAATCAGTTTTTTTTTTTTTTTT |
Integrated DNA Technology (IDT) | N/A (custom) |
Yclv3 for enzyme assay AGCGGTATCAGCAGGATGACGATGAGCTCATCGTCATCCTACAGAATCAGTTTTTTTTTTTTTTTT |
Integrated DNA Technology (IDT) | N/A (custom) |
Yclv4 for enzyme assay AGCGGTATCAGCAGGATAACGATGAGCTCATCGTTATCCTACAGAATCAGTTTTTTTTTTTTTTTT |
Integrated DNA Technology (IDT) | N/A (custom) |
Yclv5 for enzyme assay AGCGGTATCAGCAGGATAACAATGAGCTCATTGTTATCCTACAGAATCAGTTTTTTTTTTTTTTTT |
Integrated DNA Technology (IDT) | N/A (custom) |
Yclv6 for enzyme assay CCCTTTCCTTCATCGATAAGCTTTAATTAAAGCTTATCGATGAAAAGGAATTTTTTTTTTTTTTTT |
Integrated DNA Technology (IDT) | N/A (custom) |
Complementary oligonucleotides for sequences above, See Table S2 | Integrated DNA Technology (IDT) | N/A (custom) |
Oligonucleotides for cyclization assay, See Table S2 | Integrated DNA Technology (IDT) | N/A (custom) |
Software and Algorithms | ||
IDL | Exelis Visual Information Solutions | https://www.harrisgeospatial.com/Software-Technology/IDL |
Matlab R2017b | Mathworks | https://www.mathworks.com/products/matlab.html |
OriginPro 9.1 | OriginLabs | https://www.originlab.com/Origin |
smFRET data acquisition program | Taekjip Ha (Johns Hopkins Univ.) | http://ha.med.jhmi.edu/resources |
IDL scripts (custom) | This work | N/A |
Matlab scripts (custom) | This work | N/A |