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. 2019 Apr 1;116(16):8070–8079. doi: 10.1073/pnas.1818259116

Table 1.

Part list used to build the C. eth-1.0 genome design

DNA part category Quantity Size (bp) Fraction (%)
Protein-coding sequences 676 660,789 83.9
 Essential 462 471,072 59.8
 Semiessential 113 114,270 14.5
 Redundant 15 14,970 1.9
 Nonessential 86 60,477 7.7
Noncoding sequences 54 9,726 1.2
 tRNA 44 3,455 0.4
 rRNA 3 4,387 0.6
 ncRNA 7 1,884 0.2
Intergenic sequences 1,015 96,043 12.2
Genome replication and assembly 16 19,143 2.5
 Click markers* 5 6,352 0.8
 ARS 10 2,121 0.3
 pMR10Y 1 10,670 1.4
  Total no. of DNA parts 1,761 785,701
*

Auxotrophic selection markers that were used to direct the assembly and maintenance of the genome design in yeast. ncRNA, noncoding RNA.

The pMR10Y shuttle vector contains a broad host-range RK2-based low copy replicon (GenBank accession no. AJ606312.1), a kanamycin selection marker, and oriT function for conjugational transfer from E. coli to Caulobacter as well as URA3 marker, ARS, and centromere (CEN) elements for selection and replication in yeast.