. Author manuscript; available in PMC: 2019 Apr 21.

Published in final edited form as: Stat Appl Genet Mol Biol. 2018 Dec 4;17(6):/j/sagmb.2018.17.issue-6/sagmb-2017-0054/sagmb-2017-0054.xml. doi: 10.1515/sagmb-2017-0054

Table 4.

Summary of association between six selected SNP markers and testicular germ cell tumor

Gene	Marker	Nonrisk/risk	RAF		Per Allele OR (95% CI)		Width of CI
		Allele	Controls	Cases	PCA	PCAPS	PCA	PCAPS
KITLG	rs4474514	A/G	0.802	0.899	2.33 (1.68–3.24)	2.03 (1.48–2.79)	1.56	1.31
	rs3782181	T/G	0.798	0.894	2.21 (1.61–3.05)	1.95 (1.43–2.66)	1.44	1.23
	rs1472899	T/C	0.801	0.897	2.18 (1.58–3.00)	1.92 (1.41–2.62)	1.43	1.21
	rs3782179	A/G	0.802	0.896	2.22 (1.61–3.07)	1.95 (1.43–2.67)	1.46	1.24
	rs11104952	C/A	0.802	0.896	2.22 (1.60–3.05)	1.95 (1.43–2.65)	1.45	1.23

Marker, dbSNP rs number; RAF, risk allele frequency; OR, odds ratio; CI, confidence interval; PCA, principal components analysis; PCAPS, principal components and propensity score.