FIG 2.
(A) Percentages of reads mapping on HT-STNV-1 CP and host transcripts in the leaves and in the virions purified from agroinfiltrated leaves. (B) Percentages of reads mapping on HT-STNV-1 CP, STNV-1WT, and host transcripts in the leaves and in the virions purified from agroinfiltrated leaves. (C and E) Principal-component analysis of host transcript levels in the leaves (green dots) and in the virions (red dots) following agroinfiltration with pEAQ-HT-STNV-1 CP alone (C) and pEAQ-HT-STNV-1 CP together with pEAQ-STNV-1WT (E). (D and F) Numbers of N. benthamiana transcripts not expressed (RPKM < 1), expressed at low levels (1 < RPKM < 5), expressed at medium levels (5 < RPKM < 25), and expressed at high levels (25 < RPKM) in each NGS sample. (G) Percentages of transcripts and reads derived from distinct species of encapsidated host RNAs.