. Author manuscript; available in PMC: 2019 Apr 23.

Published in final edited form as: Nat Biotechnol. 2018 Oct 22:10.1038/nbt.4277. doi: 10.1038/nbt.4277

Table 1.

Trio heterozygosity, binning, and assembly statistics.

Species	Total cov.	Haplotype	Haplotype k-mers	Assigned bases	Haplotype coverage	No. haplotigs	Haplotig NG50 (Mbp)	Assembly size (Mbp)
A. thaliana	180.6×	Col-0	12.3%	50.8%	87.8×	215	7.03	123.52
A. thaliana	180.6×	Cvi-0	12.1%	48.5%	91.9×	163	5.61	122.35
H. sapiens	72.3×	NA12891	0.9%	43.2%	31.3×	7,252	1.18	2,743.25
H. sapiens	72.3×	NA12892	1.0%	44.2%	31.9×	7,388	1.17	2,749.17
B. taurus	135×	Angus	2.9%	49.3%	66.6×	1,747	26.65	2,573.81
B. taurus	135×	Brahman	4.8%	49.6%	67.0×	1,585	23.26	2,678.77

Total cov: total F1 sequencing coverage relative to the haploid genome size. Haplotype: F1 parental haplotype. Haplotype k-mers: fraction of diploid genome k-mers specific to this haplotype (16-mers for A. thaliana and 21-mers for H. sapiens and B. taurus). Assigned bases: percent of all sequencing read bases assigned to this haplotype. Coverage: depth of coverage for all reads assigned to this haplotype. Haplotig NG50: half of the haplotype is contained in haplotigs of this size or larger (based on haploid genome size estimate for each species).