Table 3.
Epigenetic dysregulation in aging: non-coding RNAs.
| Regulation | ncRNA | Observed in | Sample size | Approach | Methods | Reference |
|---|---|---|---|---|---|---|
| ≠ | miRNA lin-4 | C. elegans | N.S. | Targeted | RFLP mapping, Southern Blot, Northern Blot |
Lee et al., 1993 |
| ↑ | miR-34 | C57BL/6J mice | N.S. | Genome-wide | microRNA microarray | Maes et al., 2008 |
| ↑ | miR-93 | |||||
| ↑ | miR-2l4 | |||||
| ↑ | miR-669c | |||||
| ↑ | miR-709 | |||||
| ↓ | miR-24 | Human (blood) | 10-14 | Targeted | miRNome miRNA profiling | Noren Hooten |
| ↓ | miR-103 | (800 miRNAs) | et al., 2010 | |||
| ↓ | miR-107 | |||||
| ↓ | miR-l28 | |||||
| ↓ | miR-130a | |||||
| ↓ | miR-155 | |||||
| ↓ | miR-221 | |||||
| ↓ | miR-496 | |||||
| ↓ | miR-1538 | |||||
| ≠ | miR-29 | C57BL/6J mice and human | Mice: 4; Human: l09 | Genome-wide | microRNA microarray | Boon et al., 2011 |
| miR-34a | Sirt1+/−, Ku80−/− and miR-34a−/− mice |
≥4 | Targeted (570 miRNAs) | PCR, lSH | Boon et al., 2013 | |
| miR-l46a | HUVEC | - | Genome-wide | microRNA microarray | Vasa-Nicotera et al., 2011 | |
| HUVEC, HAEC, HCAEC | - | Targeted (367 miRNAs) | microRNA microarray, PCR | Olivieri et al., 2013 | ||
| miR-217 | HUVEC, HAEC, HCAEC | - | Targeted (10 miRNAs) | microRNA microarray, PCR, Northern Blot |
Menghini et al., 2009 | |
| ↓ | miR-17 | Human cell lines | - | Targeted (599 miRNAs) | microRNA microarray, PCR | Hackl et al., 2010 |
| ↓ | miR-l9c | |||||
| ↓ | miR-20a | |||||
| ↓ | miR-106a | |||||
| ↓ | miR-l46a | HUVEC | - | Genome-wide | microRNA microarray | Vasa-Nicotera et al., 2011 |
| ↑ | miR-26a | |||||
| ↑ | miR-181a | |||||
| ↑ | miR-221 | |||||
| ↑ | miR-200b | |||||
| ↑ | miR-200c | Human cell lines | - | Targeted (1 miRNA) |
WB | Magenta et al., 2011 |
| ↑ | miR-144 | Human (Cortex and Cerebellum) Chimpanzee Macaque monkey |
8 4 5 |
Genome-wide | microRNA microarray | Persengiev et al., 2011 |
| ≠ | miR-l6 | SAMP8 mouse | N.S. | Targeted (7 miRNAs) |
PCR, ISH, IHC | Liu et al., 2012b |
indicates increased expression levels,
indicates decreased expression levels, and
indicates altered expression, not further specified.
Abbreviations: C57BL/6J mice, C57 black 6 inbred mouse strain; C. elegans, Caenorhabditis elegans; miR, micro RNA; SAMP8 mouse, senescence-accelerated prone mouse 8; HUVEC, human umbilical vein endothelial cells; HAEC, human aortic endothelial cells; HCAEC, human coronary artery endothelial cells; N.S., not specified; RFLP, Restriction fragment length polymorphism; PCR, polymerase chain reaction; ISH: in situ hybridization; WB, Western blot; IHC, immunohistochemistry.