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. 2019 Apr 23;14(4):e0215960. doi: 10.1371/journal.pone.0215960

Table 2. Plasmids and cosmids used in the current study.

Plasmid/cosmid Antibiotic resistance marker(s)a Description Source/Reference
pGEMT-Easy AmpR General E. coli cloning vector Promega
pET30b KanR E. coli protein expression vector Novagen
pHM11a HygR Integrative Streptomyces expression vector containing the constitutive ermEp* [36]
pSET152 AprR Integrative Streptomyces cloning vector [37]
pIJ773 AprR Template plasmid for preparing the ReDirect apra disruption cassette [34]
pIJ10700 HygR Template plasmid for preparing the ReDirect hyg disruption cassette [34]
pET30b-cpeSc KanR Plasmid vector used to express C-terminal 6×His-tagged Cpe in E. coli for purification This study
12B8 AmpR, KanR Cosmid clone containing the clavulanic acid biosynthetic gene cluster from S. clavuligerus [19]
12B8-Δcpe::apra AprR, AmpR, KanR Mutant cosmid 12B8 in which cpe has been replaced by the disruption cassette from plasmid pIJ773 using the ReDirect system This study
12B8-Δcpe-INF AmpR, KanR Mutant cosmid 12B8 in which cpe has been replaced by the 81-bp in-frame “scar” sequence using the ReDirect system This study
12B8-Δcpe-INF-Δamp::hyg HygR, KanR Cosmid 12B8-Δcpe-INF in which ampicillin resistance gene replaced by the hyg cassette from plasmid pIJ10700 using the ReDirect system This study
pHM:cpeSc HygR Expression plasmid pHM11a containing cpe from S. clavuligerus This study
pHM:cpeSf HygR Expression plasmid pHM11a containing cpe from S. flavogriseus This study
pHM:cpeSv HygR Expression plasmid pHM11a containing cpe from S. viridis This study
pHM:cpeSj HygR Expression plasmid pHM11a containing cpe from S. jumonjinensis This study
pHM:cpeSk HygR Expression plasmid pHM11a containing cpe from S. katsurahamanus This study
pHM:blipFLAG HygR Expression plasmid pHM11a containing blip from S. clavuligerus with a C-terminal FLAG tag This study
pHM:ccaRFLAG HygR Expression plasmid pHM11a containing ccaR from S. clavuligerus with a C-terminal FLAG tag This study
pHM:cpeSc-FLAG HygR Expression plasmid pHM11a containing cpe from S. clavuligerus with a C-terminal FLAG tag This study
pHM:cpeSc-6×his HygR Expression plasmid pHM11a containing cpe from S. clavuligerus with a C-terminal 6×His tag This study
pHM:cpeCt HygR Expression plasmid pHM11a containing the C-terminal domain of cpe from S. clavuligerus This study
pHM:cpeNt HygR Expression plasmid pHM11a containing the N-terminal domain of cpe from S. clavuligerus This study
pHM-cpeCt+Nt HygR Expression plasmid pHM11a containing the N-terminal and C- terminal domains of cpe from S. clavuligerus, each expressed independently under the control of the ermEp* This study
pSET:cpeSc AprR Plasmid pSET152 containing the S. clavuligerus cpe gene along with ermEp* from pHM11a was used as template to prepare all described cpeSc site directed mutants This study

aAmpR, ampicillin resistance; AprR, apramycin resistance; KanR, kanamycin resistance, HygR, hygromycin resistance.