Table 3. Genes in the candidate kidney damage region with differential expression in RNA-Seq analysis.
| Gene |
Start
(bp position) |
End
(bp position) |
ID | P(DeSeq2) | P(Cuffdiff) | Straina |
|---|---|---|---|---|---|---|
| Acot3 | 107,531,528 | 107,536,789 | ENSRNOG00000053460 | 0.09426742 | 0.00799931 | SHR |
| Rps6kl1 | 108,961,994 | 108,976,489 | ENSRNOG00000005530 | 0.024515465 | 0.0186294 | MWF |
| Acot5 | 107,550,904 | 107,557,688 | ENSRNOG00000032508 | 0.000234652 | 0.000948356 | SHR |
| Papln | 107,245,820 | 107,276,755 | ENSRNOG00000009448 | 8.82E-05 | 0.000948356 | MWF |
| Tmem63c | 111,049,559 | 111,120,799 | ENSRNOG00000011334 | 6.26E-06 | 0.000948356 | MWF |
| Flvcr2 | 109,617,355 | 109,681,495 | ENSRNOG00000008754 | 2.06E-06 | 0.000948356 | MWF |
| Jdp2 | 109,466,060 | 109,505,161 | ENSRNOG00000008224 | 0.052146312 | 0.00245615 | SHR |
| Esrrb | 110,410,141 | 110,455,906 | ENSRNOG00000010259 | 0.278291584 | 0.00245615 | SHR |
| Tgfb3 | 109,913,757 | 109,935,533 | ENSRNOG00000009867 | 0.019914732 | 0.0632265 | SHR |
| Vash1 | 110,624,856 | 110,637,382 | ENSRNOG00000010457 | 0.070552875 | 0.00314268 | MWF |
MWF, Munich Wistar Frömter; RNA-Seq, RNA sequencing; SHR, spontaneously hypertensive rat. Genes shown in bold were found to be significantly differentially expressed using both CuffDiff and DeSeq2 analysis. a The strain name is given for upregulation of mRNA expression.