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. Author manuscript; available in PMC: 2020 Apr 15.
Published in final edited form as: Dev Biol. 2018 Oct 23;448(2):210–225. doi: 10.1016/j.ydbio.2018.10.010

Table 1.

Muscle and notochord genes assayed.

Gene Name Probe
Name*
Normal Site of
Expression
KH Gene Model
Muscle Actin (MA3) Actin Muscle KH.C7.67
SET MYND
Domain
(QZF438)
SMYD1 Muscle KH.S423.6
Tropomyosin 2 TPM2 Muscle KH.C3.814
Troponin I Tnl Muscle KH.C 11.673
Brachyury (T) Bra Notochord KH.S 1404.1
Notol Notol Notochord KH.S643.6
Tropomyosin-Like TmL Notochord KH.C7.260
microRNA-1/133 miR-1/133 Muscle KhCl :8,386,031 ..8,401,030
*

Probe Name refers to the name used in this study to describe the probe. Except for Troponin I whose sequence corresponds to the Ciona intestinalis gene (MacLean et al., 1997), all probe sequences correspond to Ciona robusta genes.

Indicates the KH genomic coordinates of the miR-1/133 probe sequence, which falls within a large intron of the Mindbomb E3 Ligase gene (mib; KH.C1.94). KH refers to Kyoto Hoya gene models.