| EC | Epicatechin |
| GC | Gallocatechin |
| EGC | Epigallocatechin |
| CG | Catechin-3-gallate |
| ECG | Epicatechin-3-gallate |
| GCG | Gallocatechin-3-gallate |
| EGCG | Epigallocatechin-3-gallate |
| Pin1 | Peptidyl-prolyl cis/trans isomerase NIMA-interacting 1 |
| MD | Molecular Dynamic |
| GO | Gene Ontology |
| KEGG | Kyoto Encyclopedia of Genes and Genomes |
| DAVID | The Database for Annotation, Visualization and Integrated Discovery |
| PPI | Protein–protein Interaction |
| TP | Target–pathway |
| NVT | Constant number of particles, volume and temperature |
| NPT | Constant number of particles, pressure and temperature |
| PME | Particle Mesh Ewald |
| LINCS | Linear Constraint Solver |
| RMSD | Root Mean Square Deviation |
| GAD | Genetic Association Database |
| FYN | Proto-oncogene tyrosine-protein kinase FYN |
| NOS2 | Nitric Oxide Synthase 2 |
| CDK2 | Cyclin-Dependent Kinase 2 |
| CDK7 | Cyclin-Dependent Kinase 7 |
| ABL1 | Abelson Murine Leukemia Viral Oncogene Homolog 1 |
| SYK | Spleen tyrosine kinase |
| AKT2 | Serine-threonine protein kinase AKT2 |
| MAPK8 | Mitogen-activated protein kinase 8 |
| AKT1 | Serine-threonine protein kinase AKT1 |
| KRAS | Kirsten Rat Sarcoma Viral Oncogene |
| IRAK4 | Interleukin-1 Receptor-Associated Kinase 4 |
| WEE1 | Mitosis inhibitor protein kinase WEE1 |
| JAK3 | Tyrosine-protein kinase JAK3 |
| APAF1 | Apoptotic Protease Activating Factor 1 |
| NTRK1 | High affinity nerve growth factor receptor 1 |
| NTRK2 | High affinity nerve growth factor receptor 2 |
| MAP3K5 | Mitogen-Activated Protein Kinase Kinase Kinase 5 |
| IKBKB | Inhibitor of nuclear factor kappa-B kinase subunit beta |
| TP53I3 | Quinone oxidoreductase PIG3 |
| PIM1 | Serine/threonine-protein kinase PIM1 |
| PARP3 | Poly ADP-ribose polymerase 3 |
| PLK2 | Serine/threonine-protein kinase PLK2 |
| PLK3 | Serine/threonine-protein kinase PLK3 |
| BUB1 | Mitotic checkpoint serine/threonine-protein kinase BUB1 |
| AKT1 | RAC-alpha serine/threonine-protein kinase 1 |
| AKT2 | RAC-alpha serine/threonine-protein kinase 2 |
| PRKCQ | Protein kinase C theta type |
| JAK | Tyrosine-protein kinase JAK |
| STAT | Signal transducer and activator of transcription |
| NF-kB | Nuclear factor NF-kappa-B |
| FOXO | Forkhead Box O |
| PI3K | Phosphoinositide 3-kinase |
| iNOS | Inducible nitric oxide synthase |
| ICAM-1 | Intercellular cell adhesion molecule-1 |
| TNF | Tumor Necrosis Factor |
| TNFR | Tumor necrosis factor receptor |
| TLR | Toll-like receptors |
| BCR | B cell receptor |
| TCR | T cell receptor |
| NFKB1 | Nuclear factor NF-kappa-B |
| MAPK | Mitogen-activated protein kinase |