Table 4.
Differential expression results for TEs
| TE | EGG CHAMBER | ||||
|---|---|---|---|---|---|
| fold difference | FDR adj. p-value | ||||
| Ral_321 | Ral_237 | drxn w/ age | age | strain x age | |
| Tirant | 3.02 | 1.80 | down | 0.007 | 0.940 |
| 297 | 2.13 | 1.45 | down | 0.010 | 0.869 |
| Gypsy | 3.10 | 1.11 | down | 0.011 | 0.125 |
| Copia | 4.36 | 1.79 | up | 0.034 | 0.849 |
| P-element | 1.44 | 1.19 | down | 0.041 | 0.939 |
| Pogo | 2.99 | 1.49 | down, up | 0.125 | 0.027 |
| Juan | 1.16 | 1.96 | down, up | 0.597 | 0.039 |
TEs that show significant differential expression with age in egg chambers. Two TEs show a strain-by-age interaction. Fold change refers to fold change differences in RPKM levels, as indicated by direction of change with age (drxn w/age). Bold indicates p-value < 0.05