Table 1.
Overview of TCP genes in switchgrass.
| Gene namea | Gene IDb | ORF length (bp) | Deduced polypeptide | Chr | Chr location | ||
|---|---|---|---|---|---|---|---|
| Length (aa) | MW (kDa) | pI | |||||
| PvTCP1 | Pavir.1KG397100 | 663 | 220 | 22.53 | 9.83 | 01K | 63645349-63646113 |
| PvTCP2 | Pavir.1KG510200 | 1188 | 395 | 39.93 | 9.42 | 01K | 75765762-75768115 |
| PvTCP3 | Pavir.1KG552700 | 681 | 226 | 23.00 | 9.79 | 01K | 79521775-79523415 |
| PvTCP4 | Pavir.1NG030900 | 426 | 141 | 14.49 | 10.42 | 01N | 3887213-3889118 |
| PvTCP5 | Pavir.1NG539700 | 1206 | 401 | 40.27 | 9.42 | 01N | 89471749-89473804 |
| PvTCP6 | Pavir.1NG547900 | 663 | 220 | 22.50 | 10.09 | 01N | 96987327-96989924 |
| PvTCP7 | Pavir.2KG036700 | 957 | 318 | 33.85 | 6.29 | 02K | 5031244-5036367 |
| PvTCP8 | Pavir.2KG296300 | 801 | 266 | 28.62 | 6.05 | 02K | 65347281-65349763 |
| PvTCP9 | Pavir.2NG040500 | 1293 | 430 | 45.36 | 9.32 | 02N | 5718258-5719550 |
| PvTCP10 | Pavir.2NG168500 | 933 | 310 | 32.42 | 10.10 | 02N | 32012380-32013416 |
| PvTCP11 | Pavir.2NG320400 | 795 | 264 | 28.39 | 6.21 | 02N | 59626967-59628392 |
| PvTCP12 | Pavir.2NG441900 | 990 | 329 | 33.63 | 4.95 | 02N | 81045305-81046294 |
| PvTCP13 | Pavir.3KG357500 | 870 | 289 | 30.21 | 8.93 | 03K | 28804800-28807508 |
| PvTCP14 | Pavir.3KG547300 | 870 | 289 | 30.66 | 6.38 | 03K | 69673046-69678099 |
| PvTCP15 | Pavir.3NG031100 | 1200 | 399 | 40.43 | 5.99 | 03N | 2368139-2370112 |
| PvTCP16 | Pavir.3NG279000 | 864 | 287 | 30.06 | 5.96 | 03N | 52604278-52608164 |
| PvTCP17 | Pavir.4KG172900 | 1197 | 398 | 40.38 | 8.97 | 04K | 10928170-10929640 |
| PvTCP18 | Pavir.4NG098900 | 1173 | 389 | 39.50 | 7.83 | 04N | 13829961-13832629 |
| PvTCP19 | Pavir.4NG231900 | 978 | 325 | 34.15 | 6.29 | 04N | 19989691-19991909 |
| PvTCP20 | Pavir.5KG544700 | 1251 | 416 | 44.33 | 6.38 | 05K | 94391370-94392775 |
| PvTCP21 | Pavir.5KG556600 | 837 | 278 | 29.62 | 8.08 | 05K | 95365227-95369286 |
| PvTCP22 | Pavir.5KG742600 | 978 | 325 | 33.98 | 6.37 | 05K | 113279411-113281724 |
| PvTCP23 | Pavir.5NG501800 | 1272 | 423 | 45.00 | 6.41 | 05N | 86933569-86934999 |
| PvTCP24 | Pavir.5NG508900 | 531 | 176 | 18.87 | 9.75 | 05N | 87491419-87493406 |
| PvTCP25 | Pavir.6KG270000 | 849 | 282 | 30.48 | 6.80 | 06K | 55905938-55907215 |
| PvTCP26 | Pavir.6KG395100 | 1065 | 354 | 36.50 | 5.51 | 06K | 70566109-70567758 |
| PvTCP27 | Pavir.6NG051800 | 1215 | 404 | 42.02 | 9.02 | 06N | 10745904-10747230 |
| PvTCP28 | Pavir.6NG140000 | 711 | 236 | 25.40 | 5.61 | 06N | 58122711-58123421 |
| PvTCP29 | Pavir.6NG344700 | 1329 | 442 | 45.95 | 8.82 | 06N | 77613527-77615377 |
| PvTCP30 | Pavir.7KG023900 | 525 | 174 | 18.14 | 8.25 | 07K | 23221010-23224633 |
| PvTCP31 | Pavir.7KG255700 | 606 | 201 | 20.79 | 10.01 | 07K | 56383609-56384723 |
| PvTCP32 | Pavir.7NG066100 | 285 | 94 | 9.70 | 4.59 | 07N | 15663289-15674390 |
| PvTCP33ζ | Pavir.7NG333200 | 603 | 200 | 20.79 | 9.82 | 07N | 55200631-55201233 |
| PvTCP34 | Pavir.8KG079400 | 1209 | 402 | 41.22 | 8.77 | 08K | 9383778-9386025 |
| PvTCP35 | Pavir.8NG062800 | 1191 | 396 | 40.65 | 9.13 | 08N | 8490834-8493093 |
| PvTCP36 | Pavir.9KG031700 | 1110 | 369 | 39.15 | 8.55 | 09K | 2411064-2412737 |
| PvTCP37 | Pavir.9NG079800 | 1158 | 385 | 39.42 | 9.32 | 09N | 5336448-5340260 |
| PvTCP38 | Pavir.9NG142700 | 1116 | 371 | 39.78 | 8.39 | 09N | 13496559-13498279 |
| PvTCP39 | Pavir.J125500 | 582 | 193 | 19.25 | 10.19 | scaffold14987 | 1395-1995 |
| PvTCP40 | Pavir.J227000 | 888 | 295 | 31.09 | 8.91 | scaffold20 | 54419-56973 |
| PvTCP41 | Pavir.J362100 | 1335 | 444 | 46.34 | 6.78 | scaffold276 | 1-2111 |
| PvTCP42 | Pavir.J675700 | 1353 | 450 | 46.78 | 6.67 | scaffold7087 | 83-2442 |
aGene name referred to the identified PvTCP genes in switchgrass in this study. bGene ID in Phytozome v12.0 database. ζCorrected TCP genes by PCR and PviUTs database (https://switchgrassgenomics.noble.org/).