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. 2019 Apr 9;2019:8514928. doi: 10.1155/2019/8514928

Table 3.

Putative cis-acting DNA elements in the promoter of PvTCP genes.

Clade name Element no.a Element nameb Signal sequencec Putative functiond FOe
PCF S000449 CACTFTPPCA1 YACT Photosynthesis 237
S000265 DOFCOREZM AAAG Photosynthesis; leaf and shoot development 213
S000454 ARR1AT NGATT Cytokinin response 161
S000198 GT1CONSENSUS GRWAAW HR reaction f ; systemic acquired resistance 146
S000407 MYCCONSENSUSAT CANNTG Abiotic stress; salinity stress 143
S000144 EBOXBNNAPA CANNTG Salinity stress; phenylpropanoid biosynthesis 143
S000501 CGCGBOXAT VCGCGB Calmodulin; auxin response 108
S000447 WRKY71OS TGAC Biotic and abiotic stress; GA response 97
S000378 GTGANTG10 GTGA Pollen development; pectin regulation 95
S000493 CURECORECR GTAC Copper; oxygen; hypoxic reaction 92
S000245 POLLEN1LELAT52 AGAAA Pollen development 91
S000415 ACGTATERD1 ACGT Photosynthesis 74
S000462 NODCON2GM CTCTT Root nodulin 66
S000203 TATABOX5 TTATTT Glutamine synthetase 45
S000457 WBOXNTERF3 TGACY Jasmonic acid response 43
S000179 MYBPZM CCWACC Flavonoid biosynthesis; seed development 37
S000176 MYBCORE CNGTTR Abiotic stress; salinity; flavonoid biosynthesis 35

CYC/TB1 S000449 CACTFTPPCA1 YACT Photosynthesis 87
S000265 DOFCOREZM AAAG Photosynthesis; leaf and shoot development 53
S000407 MYCCONSENSUSAT CANNTG Abiotic stress; salinity stress 48
S000144 EBOXBNNAPA CANNTG Salinity stress; phenylpropanoid biosynthesis 48
S000198 GT1CONSENSUS GRWAAW HR reaction; systemic acquired resistance 38
S000454 ARR1AT NGATT Cytokinin response 33
S000378 GTGANTG10 GTGA Pollen development; pectin regulation 32
S000447 WRKY71OS TGAC Biotic and abiotic stress; GA response 21
S000482 SORLIP1AT GCCAC phyA; phytochrome; light response 17
S000203 TATABOX5 TTATTT Glutamine synthetase 14
S000030 CCAATBOX1 CCAAT Heat shock response 13
S000103 SEF4MOTIFGM7S RTTTTTR Seed globulin 10

CIN S000449 CACTFTPPCA1 YACT Photosynthesis 153
S000454 ARR1AT NGATT Cytokinin response 132
S000265 DOFCOREZM AAAG Photosynthesis; leaf and shoot dvelopment 103
S000407 MYCCONSENSUSAT CANNTG Abiotic stress; salinity stress 77
S000144 EBOXBNNAPA CANNTG Salinity stress; phenylpropanoid biosynthesis 77
S000501 CGCGBOXAT VCGCGB Calmodulin; auxin response 69
S000198 GT1CONSENSUS GRWAAW HR reaction; systemic acquired resistance 64
S000447 WRKY71OS TGAC Biotic and abiotic stress; GA response 49
S000493 CURECORECR GTAC Copper; oxygen; hypoxic reaction 48
S000378 GTGANTG10 GTGA Photosynthesis; leaf and shoot development 43
S000203 TATABOX5 TTATTT Glutamine synthetase 27
S000103 SEF4MOTIFGM7S RTTTTTR Seed globulin 26
S000245 POLLEN1LELAT52 AGAAA Pollen development 21

a-cThe ID number, name, and signal sequences of the element in the online PLACE program (https://sogo.dna.affrc.go.jp/). dThe putative function of each element predicted by the online PLACE program and references from NCBI. eFrequency of occurrence in the promoters of TCP genes in each clade. fCharacters in bold represent those functions related to stress response.