Table 3.
Clade name | Element no.a | Element nameb | Signal sequencec | Putative functiond | FOe |
---|---|---|---|---|---|
PCF | S000449 | CACTFTPPCA1 | YACT | Photosynthesis | 237 |
S000265 | DOFCOREZM | AAAG | Photosynthesis; leaf and shoot development | 213 | |
S000454 | ARR1AT | NGATT | Cytokinin response | 161 | |
S000198 | GT1CONSENSUS | GRWAAW | HR reaction f ; systemic acquired resistance | 146 | |
S000407 | MYCCONSENSUSAT | CANNTG | Abiotic stress; salinity stress | 143 | |
S000144 | EBOXBNNAPA | CANNTG | Salinity stress; phenylpropanoid biosynthesis | 143 | |
S000501 | CGCGBOXAT | VCGCGB | Calmodulin; auxin response | 108 | |
S000447 | WRKY71OS | TGAC | Biotic and abiotic stress; GA response | 97 | |
S000378 | GTGANTG10 | GTGA | Pollen development; pectin regulation | 95 | |
S000493 | CURECORECR | GTAC | Copper; oxygen; hypoxic reaction | 92 | |
S000245 | POLLEN1LELAT52 | AGAAA | Pollen development | 91 | |
S000415 | ACGTATERD1 | ACGT | Photosynthesis | 74 | |
S000462 | NODCON2GM | CTCTT | Root nodulin | 66 | |
S000203 | TATABOX5 | TTATTT | Glutamine synthetase | 45 | |
S000457 | WBOXNTERF3 | TGACY | Jasmonic acid response | 43 | |
S000179 | MYBPZM | CCWACC | Flavonoid biosynthesis; seed development | 37 | |
S000176 | MYBCORE | CNGTTR | Abiotic stress; salinity; flavonoid biosynthesis | 35 | |
| |||||
CYC/TB1 | S000449 | CACTFTPPCA1 | YACT | Photosynthesis | 87 |
S000265 | DOFCOREZM | AAAG | Photosynthesis; leaf and shoot development | 53 | |
S000407 | MYCCONSENSUSAT | CANNTG | Abiotic stress; salinity stress | 48 | |
S000144 | EBOXBNNAPA | CANNTG | Salinity stress; phenylpropanoid biosynthesis | 48 | |
S000198 | GT1CONSENSUS | GRWAAW | HR reaction; systemic acquired resistance | 38 | |
S000454 | ARR1AT | NGATT | Cytokinin response | 33 | |
S000378 | GTGANTG10 | GTGA | Pollen development; pectin regulation | 32 | |
S000447 | WRKY71OS | TGAC | Biotic and abiotic stress; GA response | 21 | |
S000482 | SORLIP1AT | GCCAC | phyA; phytochrome; light response | 17 | |
S000203 | TATABOX5 | TTATTT | Glutamine synthetase | 14 | |
S000030 | CCAATBOX1 | CCAAT | Heat shock response | 13 | |
S000103 | SEF4MOTIFGM7S | RTTTTTR | Seed globulin | 10 | |
| |||||
CIN | S000449 | CACTFTPPCA1 | YACT | Photosynthesis | 153 |
S000454 | ARR1AT | NGATT | Cytokinin response | 132 | |
S000265 | DOFCOREZM | AAAG | Photosynthesis; leaf and shoot dvelopment | 103 | |
S000407 | MYCCONSENSUSAT | CANNTG | Abiotic stress; salinity stress | 77 | |
S000144 | EBOXBNNAPA | CANNTG | Salinity stress; phenylpropanoid biosynthesis | 77 | |
S000501 | CGCGBOXAT | VCGCGB | Calmodulin; auxin response | 69 | |
S000198 | GT1CONSENSUS | GRWAAW | HR reaction; systemic acquired resistance | 64 | |
S000447 | WRKY71OS | TGAC | Biotic and abiotic stress; GA response | 49 | |
S000493 | CURECORECR | GTAC | Copper; oxygen; hypoxic reaction | 48 | |
S000378 | GTGANTG10 | GTGA | Photosynthesis; leaf and shoot development | 43 | |
S000203 | TATABOX5 | TTATTT | Glutamine synthetase | 27 | |
S000103 | SEF4MOTIFGM7S | RTTTTTR | Seed globulin | 26 | |
S000245 | POLLEN1LELAT52 | AGAAA | Pollen development | 21 |
a-cThe ID number, name, and signal sequences of the element in the online PLACE program (https://sogo.dna.affrc.go.jp/). dThe putative function of each element predicted by the online PLACE program and references from NCBI. eFrequency of occurrence in the promoters of TCP genes in each clade. fCharacters in bold represent those functions related to stress response.