TABLE I.
1H NMR | Kd (μM)e | |||||
---|---|---|---|---|---|---|
Yield (wt.%)a | Pept./ME (mol %)b | (g/mol)c | MALDI-ToF (m/z)d | ITC | FA | |
PEG-VS | 72 | … | 2089 | [M+Na]+ 2126 | … | … |
[M+K]+ 2110 | ||||||
PEG-pep1 | 66 | 80/20 | 2851 | [M]+ 2686 | 103 ± 5 Pep1: 44 ± 9 | 135 ± 8 Pep1: 40 ± 1 |
PEG-pep2 | 60 | 86/14 | 2891 | [M]+ 2770 | Not detected Pep2: 351 ± 10 | 1.8± 0.6 × 103 Pep2: 335 ± 6 |
PEG-pep3 | 90 | 70/30 | 2662 | [M+Na]+ 2727[M+H]+ 2705 | Not measurable Pep3: not detected | Not measurable Pep3: not detected |
Calculated as the weight of recovered material/theoretical weight of the reaction product.
Proton nuclear magnetic resonance (1H-NMR) spectra, chemical structures, and proton numbering are reported in supplementary material, Fig. 7SI. The ratio between peptide- and ME-terminated PEG is calculated from the ratio of the resonance of a PEG-ME methylene at 2.84 ppm (protons A, in α to the thioether and β to the terminal primary alcohol) and the PEG-pep proline main chain protons either at 4.54 (H19) and 4.47 (H11) ppm (for PEG-pep1), at 4.48 (H11) ppm (for PEG-pep2) or at 4.57–4.45 (H11, H17) ppm (for PEG-pep3); the vinyl sulfone peak has completely disappeared.
PEG-VS samples: calculated using the number of repeating units calculated by averaging the ratio of the 1H NMR resonance of the PEG-VS terminal groups (methylene and ethylene protons at 3.25 ppm and 6.1/6.4 ppm) and those in the main chain at 3.5–3.8 ppm. PEG-peptide samples: calculated from the ratio of the 1H NMR resonances of terminal groups [obtained averaging the PEG-ME methylene (protons A) or PEG-peptides proline protons (H11, H17, H19)], and those of PEG main chain.
Most intense peaks in MALDI-ToF (Matrix-Assisted Laser Desorption/Ionization-Time of Flight) spectra; all other peaks in the distribution are spaced by an additive 44 mass atomic units (see also supplementary material, Fig. 6SI).
Kd values obtained through fluorescence anisotropy (FA) and isothermal titration calorimetry (ITC) as described in the Methods section and in supplementary material, Sec. 1SI. The values obtained for non-conjugated peptides are also reported; note that Pep3 showing no binding, no competition assay is possible for PEG-pep3. n = 3 independent samples for both techniques.