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. 2019 Apr 24;14(4):e0202063. doi: 10.1371/journal.pone.0202063

Table 6. Top gene ontology enrichment results for ventral tegmental area mega module bisque.

Category Name p-value q-value Bonferroni Hit Count in Query List Hit Count in Genome Hit in Query List
GO: Cellular Component nucleolus 6.41E-07 1.24E-04 17 894 ZNF106, NEK2, EEF1D, RPL36, PNKP, SELENBP1, ZNF655, RPS9, WRN, GATA3, ZFHX3, RORC, DGCR8, TTC3, ARNTL2, NEK11, RPL18
  eukaryotic translation elongation factor 1 complex 1.27E-04 2.47E-02 2 4 EEF1D, EEF1A2
GO: Molecular Function ubiquitin-protein transferase activity 4.98E-07 1.33E-04 12 414 RC3H2, TRAF4, UBE2K, TRIM2, TRIM25, TRIM9, HECW2, TRIM8, UBE2S, RNF114, TTC3, TRIM37
  ubiquitin-like protein transferase activity 9.70E-07 2.59E-04 12 441 RC3H2, TRAF4, UBE2K, TRIM2, TRIM25, TRIM9, HECW2, TRIM8, UBE2S, RNF114, TTC3, TRIM37
  acid-amino acid ligase activity 3.42E-06 9.12E-04 9 259 RC3H2, TRIM2, TRIM25, TRIM9, HECW2, TRIM8, RNF114, TTC3, TRIM37
  ligase activity, forming carbon-nitrogen bonds 9.78E-06 2.61E-03 9 295 RC3H2, TRIM2, TRIM25, TRIM9, HECW2, TRIM8, RNF114, TTC3, TRIM37
  tubulin-glycine ligase activity 1.87E-05 5.00E-03 8 244 RC3H2, TRIM2, TRIM9, HECW2, TRIM8, RNF114, TTC3, TRIM37
  protein-glycine ligase activity 1.87E-05 5.00E-03 8 244 RC3H2, TRIM2, TRIM9, HECW2, TRIM8, RNF114, TTC3, TRIM37
  protein-glycine ligase activity, initiating 1.87E-05 5.00E-03 8 244 RC3H2, TRIM2, TRIM9, HECW2, TRIM8, RNF114, TTC3, TRIM37
  coenzyme F420-0 gamma-glutamyl ligase activity 1.87E-05 5.00E-03 8 244 RC3H2, TRIM2, TRIM9, HECW2, TRIM8, RNF114, TTC3, TRIM37
  ribosomal S6-glutamic acid ligase activity 1.87E-05 5.00E-03 8 244 RC3H2, TRIM2, TRIM9, HECW2, TRIM8, RNF114, TTC3, TRIM37
  coenzyme F420-2 alpha-glutamyl ligase activity 1.87E-05 5.00E-03 8 244 RC3H2, TRIM2, TRIM9, HECW2, TRIM8, RNF114, TTC3, TRIM37
  UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity 1.87E-05 5.00E-03 8 244 RC3H2, TRIM2, TRIM9, HECW2, TRIM8, RNF114, TTC3, TRIM37
  protein-glycine ligase activity, elongating 1.87E-05 5.00E-03 8 244 RC3H2, TRIM2, TRIM9, HECW2, TRIM8, RNF114, TTC3, TRIM37
  tubulin-glutamic acid ligase activity 2.05E-05 5.46E-03 8 247 RC3H2, TRIM2, TRIM9, HECW2, TRIM8, RNF114, TTC3, TRIM37
  protein-glutamic acid ligase activity 2.17E-05 5.79E-03 8 249 RC3H2, TRIM2, TRIM9, HECW2, TRIM8, RNF114, TTC3, TRIM37
  ligase activity 2.38E-05 6.35E-03 10 415 LIG3, RC3H2, TRIM2, TRIM25, TRIM9, HECW2, TRIM8, RNF114, TTC3, TRIM37
  DNA helicase activity 2.43E-04 6.49E-02 4 65 ERCC2, GTF2H4, RAD54B, WRN
Pathway Eukaryotic Translation Elongation 1.67E-04 8.37E-02 5 98 EEF1D, RPL36, RPS9, EEF1A2, RPL18

Functional enrichment results from ToppFun for Ventral Tegmental Area Mega Module Bisque, where Bonferroni-corrected p<0.1.