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. Author manuscript; available in PMC: 2019 Apr 24.
Published in final edited form as: Methods Mol Biol. 2019;1858:117–139. doi: 10.1007/978-1-4939-8775-7_10

Fig. 2.

Fig. 2

Preparing to run SCRMshaw. The screenshot illustrates the directory setup and required user-added files for using SCRMshaw. (a) Directory structure showing the genome file, annotation file, training set list file, and training set subdirectories. (b, c) Each training set subdirectory contains a positive (crms.fasta) and negative (neg.fasta) training data file in the form of a pair of multi-FASTA sequence files. (d) The “trainingSet. lst” file is a text file containing a list of paths to the training set subdirectories