Table 1.

Illumina libraries constructed. Two genomic DNA libraries (300, 550 bp) constructed from each of the source materials. For RNA sequencing, one library for each source was constructed.

DNA
Sample type	Library type	Average insert size [bp]	No. of reads raw data [bp]	%Q30b	Mean Qa	No. of reads after trimming & reduction [bp]	Final depth [X]
Male (Haploid)	Paired-end 125b × 2	290	84,756,564	90.34	34.28	74,249,558	84.4
Male (Haploid)	Paired-end 125b × 2	510	95,513,084	88.63	33.9	82,214,665	93.4
Worker (Diploid)	Paired-end 125b × 2	340	120,165,717	93.15	35.21	74,661,870	84.8
Worker (Diploid)	Paired-end 125b × 2	560	105,253,786	90.44	34.56	83,032,369	94.4
RNA
Male	Paired-end 125b × 2	210	184,860,252	93.07	35.13	173,306,486	N/A
Pool	Paired-end 125b × 2	240	173,787,824	93.5	35.22	173,787,824	N/A

^aMean Phred Q scores for each of the libraries, ^b%Q30 is the percentage of bases with a quality score of at least 30 for each library.