Table 2.
The TEs around WOX genes locus
| Repeat Class | No. of elements in B. napus | No. of elements in B. rapa | No. of elements in B. oleracea |
|---|---|---|---|
| Integrated Virus | 6 | 2 | 4 |
| Caulimoviridae | 6 | 2 | 4 |
| Interspersed Repeat | 1 | 1 | 0 |
| DNA transposon | 203 | 96 | 118 |
| Academ | 1 | 0 | 1 |
| Crypton | 2 | 1 | 1 |
| Dada | 1 | 1 | 2 |
| EnSpm/CACTA | 40 | 18 | 20 |
| Ginger1 | 2 | 0 | 3 |
| Ginger2/TDD | 1 | 0 | 0 |
| Harbinger | 15 | 10 | 12 |
| Helitron | 23 | 6 | 12 |
| IS3EU | 2 | 2 | 0 |
| ISL2EU | 0 | 1 | 0 |
| Kolobok | 5 | 0 | 1 |
| Mariner/Tc1 | 18 | 7 | 12 |
| Merlin | 1 | 1 | 0 |
| MuDR | 29 | 15 | 13 |
| P | 3 | 5 | 3 |
| Polinton | 9 | 5 | 4 |
| Sola | 1 | 1 | 2 |
| Sola2 | 1 | 1 | 1 |
| Sola3 | 0 | 0 | 1 |
| Zisupton | 0 | 0 | 1 |
| Transib | 1 | 1 | 0 |
| hAT | 25 | 13 | 20 |
| piggyBac | 2 | 1 | 1 |
| Endogenous Retrovirus | 5 | 3 | 4 |
| ERV1 | 1 | 1 | 0 |
| ERV2 | 1 | 1 | 1 |
| ERV3 | 1 | 1 | 1 |
| LTR Retrotransposon | 114 | 56 | 57 |
| BEL | 6 | 2 | 2 |
| Copia | 35 | 13 | 14 |
| DIRS | 0 | 1 | 1 |
| Gypsy | 68 | 37 | 34 |
| Non-LTR Retrotransposon | 73 | 45 | 52 |
| CR1 | 6 | 4 | 6 |
| Crack | 2 | 0 | 1 |
| Daphne | 3 | 1 | 3 |
| I | 2 | 0 | 2 |
| Jockey | 3 | 1 | 1 |
| L1 | 23 | 14 | 18 |
| L2 | 1 | 0 | 2 |
| NeSL | 0 | 2 | 0 |
| Nimb | 1 | 1 | 0 |
| Outcast | 1 | 1 | 0 |
| Penelope | 9 | 5 | 3 |
| R1 | 1 | 0 | 0 |
| RTE | 3 | 1 | 5 |
| RTEX | 3 | 1 | 0 |
| Rex1 | 1 | 1 | 0 |
| SINE | 8 | 5 | 4 |
| SINE2/tRNA | 8 | 5 | 4 |
| Tad1 | 0 | 2 | 2 |
| Tx1 | 4 | 2 | 3 |
| Simple Repeat | 2 | 1 | 0 |
| Satellite | 2 | 1 | 0 |
| SAT | 2 | 1 | 0 |
| Transposable Element | 402 | 202 | 235 |
| Total | 411 | 206 | 239 |