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. 2019 Apr 15;13(4):e0007293. doi: 10.1371/journal.pntd.0007293

Fig 4. An unrooted tree showing the inferred relationship between the six S. Enteritidis clinical isolates.

Fig 4

The S. Enteritidis strain P125109 was used as the reference genome sequence for read mapping. More than 97% of the reference genome was included in the core genome derived for this set of isolates. The core genome contained 1,999 sites that varied in one or more of the clinical isolates. The tree was inferred using Fast Tree and the greatest pairwise distance between isolates is 1670 SNPs, e.g. between isolates 60A and 12F.