Table 3. Publically available data for strong candidate U-box period regulators.
Locus ID | Gene name | Circadian expression | Tissue specific expression | Closest homolog | Publications (PMID) | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
LDHC | LL_LDHC | LL12_LDHH | LL23_LDHH | |||||||||||
Phase | Correlation | Phase | Correlation | Phase | Correlation | Phase | Correlation | Developmental map (eFP) | Klepikova atlas | Locus | E-Value | |||
AT5G18340 | PUB48 | 19 | 0.68 | 17 | 0.86 | 20 | 0.63 | 14 | 0.86 | Global, especially young flower and senescent leaf |
Young flower bud, Stamen, mature leaf mature petiole |
AT5G18320 | 3.8 × 10−127 | 28077082 |
AT1G04510 | MAC3A | 20 | 0.84 | 18 | 0.72 | 23 | 0.48 | 14 | 0.83 | Global | Global | AT2G33340 | 1.2 × 10−233 |
29437988
28947490 19629177 |
AT2G33340 | MAC3B | 15 | 0.49 | 8 | 0.56 | 17 | 0.80 | 8 | 0.73 | Global | Global | AT1G04510 | 7.2 × 10−229 |
29437988
28947490 19629177 |
AT3G49810 | PUB30 | 2 | 0.87 | 1 | 0.59 | 3 | 0.76 | 0 | 0.91 | Global | Everywhere except young seed and young silique |
AT5G65920 | 1.2 × 10−171 |
28865087
25410251 |