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. 2019 Feb 20;47(8):e47. doi: 10.1093/nar/gkz114

Figure 1.

Figure 1.

Run times of read aligners. Each aligner used ten threads to map 15 million 100 bp read-pairs from the SEQC UHRR sample to the human reference genome GRCh38. Rsubread::align is faster than STAR or TopHat2 regardless of whether the full index (align-F) or a gapped index (align-G) is used.