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The main Rsubread functions for read alignment and quantification
| Function | Description |
|---|---|
| buildIndex | Create hash table of target genome |
| align | Basic alignment with soft-clipping, for gene-level analyses |
| subjunc | Alignment with identification of exon–exon junctions |
| propmapped | Compute mapping statistics |
| featureCounts | Compute count matrix for specified genomic features |
Other Rsubread functions are briefly discussed in the Discussion section.
