Table 1.
Ribosomes structures used in our study
| Species/Organelles | Resolution | Reference | PDB codename |
|---|---|---|---|
| Chloroplast (Spinacia) | 3.8 Å (EM) | Ahmed et al. (2017) (82) | 5X8T |
| Mitochondria (H. Sapiens) | 3.1 Å (EM) | Amunts et al. (2015) (83) | 3J9M |
| B. subtilis (b) | 3.8 Å (EM) | Beckert et al. (2017) (84) | 5NJT |
| E. coli (b) | 2.9 Å (EM) | Fischer et al. (2015) (85) | 5AFI |
| D. radiodurans (b) | 3.4 Å (X-ray) | Krupkin et al. (2016) (86) | 5JVG |
| L. lactis (b) | 5.6 Å (EM) | Franken et al. (2017) (87) | 5MYJ |
| M. smegmatis (b) | 3.2 Å (EM) | Hentschel et al. (2017) (88) | 5O60 |
| M. tuberculosis (b) | 3.4 Å (EM) | Yang et al. (2017) (89) | 5V7Q |
| S. aureus (b) | 3.4 Å (X-ray) | Matzov et al. (2017) (90) | 5NRG |
| T. thermophilus (b) | 2.5 Å (X-ray) | Polinakov et al. (2015) (91) | 4Y4P |
| H. marismortui (a) | 2.4 Å (X-ray) | Gabdulkhakov et al. (2013) (92) | 4V9F |
| P. furiosus (a) | 6.6 Å (EM) | Armache et al. (2012) (93) | 4V6U |
| H. sapiens (e) | 2.9 Å (EM) | Natchiar et al. (2017) (94) | 6EK0 |
| L. donovani (e) | 2.9 Å (EM) | Zhang et al. (2016) (95) | 5T2A |
| P. falciparum (e) | 3.2 Å (EM) | Wong et al. (2014) (96) | 3J79 |
| S. cerevisiae (e) | 3.9 Å (EM) | Schmidt et al. (2016) (97) | 5GAK |
| T. aestivum (e) | 5.5 Å (EM) | Gogala et al. (2014) (98) | 4V7E |
| T. cruzi (e) | 2.5 Å (EM) | Liu et al. (2016) (99) | 5T5H |
| T. gondii (e) | 3.2 Å (EM) | Li et al. (2017) (34) | 5XXB |
| T. vaginalis (e) | 3.4 Å (EM) | Li et al. (2017) (34) | 5XY3 |
| E. coli (b) | 3.9 Å (EM) | Arenz et al. (2014) (100) | 3J7Z |
| T. thermophilus (b) | 2.8 Å (X-ray) | Osterman et al. (2017) (101) | 5VP2 |
| H. sapiens (e) | 3.6 Å (EM) | Khatter et al. (2015) (102) | 4UG0 |
First column contains the species, with the domain they belong to (b: bacteria, a: archaea, e: eukarya). The last three structures are replicates for H. sapiens, E. coli and T. thermophilus, used to assess the robustness of our results (see Supplementery Data).