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Comparison of results of different algorithms across three different regions of the genome for early acute samples
| Genomic region | ShoRAH | Quasi-recomb | ||
|---|---|---|---|---|
| Single T/F* | High diversity | Single T/F | High diversity | |
| Core - E2 | 17 | 37 | 26 | 28 |
| 1a* | 22% | 78% | 47% | 53% |
| 3a* | 50% | 50% | 44% | 66% |
| NS3 | 21 | 33 | 25 | 29 |
| 1a | 31% | 69% | 41% | 59% |
| 3a | 56% | 44% | 50% | 50% |
| NS5A | 23 | 31 | 29 | 25 |
| 1a | 44% | 56% | 56% | 44% |
| 3a | 37% | 63% | 44% | 56% |
1a (n-32), 3a (n-16)
