Table 3:
Common GWAS SNPs from Fingerlin et al. stratified by the MUC5B promoter variant
| SNP | Chr | Position | Nearby genes | Function | Risk Allele | MUC5B+ IPF MAF |
MUC5B− IPF MAF |
OR [95% CI] | P |
|---|---|---|---|---|---|---|---|---|---|
| rs6793295 | 3 | 169800607 | LRRC34 | Missense | C | 30% | 32% | 0⋅94 [0⋅79, 1⋅11] | 0⋅45 |
| rs2609255 | 4 | 88890044 | FAM13A | Intronic | G | 26% | 31% | 0⋅77 [0⋅65, 0⋅91] | 2⋅5 × 10 −3 |
| rs2736100 | 5 | 1286401 | TERT | Intronic | C | 42% | 42% | 1⋅01 [0⋅86, 1⋅18] | 0⋅95 |
| rs2076295 | 6 | 7562999 | DSP | Intronic | G | 56% | 55% | 1⋅00 [0⋅86, 1⋅17] | 0⋅96 |
| rs4727443 | 7 | 99995723 | AZGP1P1-ZKSCAN1 | Intergenic | A | 46% | 45% | 1⋅06 [0⋅91, 1⋅24] | 0⋅45 |
| rs11191865 | 10 | 103913084 | OBFC1 | Intronic | A | 56% | 56% | 0⋅98 [0⋅84, 1⋅16] | 0⋅85 |
| rs1278769 | 13 | 112882313 | ATP11A | 3 UTR | A | 19% | 20% | 0⋅95 [0⋅78, 1⋅15] | 0⋅59 |
| rs2034650 | 15 | 40425103 | IVD-BAHD1 | Intergenic | G | 43% | 42% | 1⋅02 [0⋅87, 1⋅19] | 0⋅80 |
| rs1981997 | 17 | 45979401 | MAPT | Intronic | N/A | N/A | N/A | N/A | N/A |
| rs12610495 | 19 | 4717660 | DPP9 | Intronic | G | 35% | 35% | 0⋅98 [0⋅84, 1⋅16] | 0⋅85 |
| rs62025270 | 15 | 85756967 | AKAP13 | Intronic | A | 25% | 24% | 1⋅01 [0⋅83, 1⋅21] | 0⋅94 |