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. Author manuscript; available in PMC: 2020 May 1.
Published in final edited form as: Mol Microbiol. 2019 Mar 26;111(5):1211–1228. doi: 10.1111/mmi.14215

Table 2.

Oligonucleotides used in this study.

Oligonucleotide Sequence
Cloning
CTX-sagS promoter_F AGGATCCCCCGGGCTGCAGGAATTCGGCCAGGTGGTCGCGCTC
CTX-sagS promoter_R CGCCTAGCATAGCCCATCCCGACCGTCTG
CTX-sagS_F GGGATGGGCTATGCTAGGCGGCAGAACC
CTX-sagS_R CGAGGTCGACGGTATCGATAAGCTTCTAGTCGCTCGCGGTGAG
PCR-Screening and Sequencing
Pser-up CGAGTGGTTTAAGGCAACGGTCTTGA
Pser-down AGTTCGGCCTGGTGGAGCAACTCG
sagS_NheI for GCGCGCGCGCTAGCATGCTAGGCGGCAGAACCTCGC
sagS_HA_SacI rev GCGCGCGCGAGCTCCTAAGCGTAGTCTGGGACGTCGTATGGGTAGTCGCTCGCGGTGAGCGG
RT-qPCR
mreB_F CTTCATCAACAAGGTCCACGA
mreB_R GCTCTTCGATCAGGAACACC
cysD_F CTGGACATCTGGCAATACAT
cysD_R TCTCTTCGTCAGAGAGATGC
chiC_F CAGTTGCACCAGGCCCGC
chiC_R GGCCAGGTCGATGGCGC
vqsR_F CTCCGAAGATTTCGAAACGA
vqsR_R GGCATAGGGTTCTTTCACCA
amrZ_F GAGCAGATCGCAGAAGTCG
amrZ_R GCGAACACCGAGATTGTCTT
lasB_F GCCGCCGACCTGATCG
lasB_R CAGCACCTGCTCGGCG
rhlA_F GCGCGATGGCGACCAC
rhlA_R CACCACCGAGCTGCGG
toxA_F CCTCAGCATCACCAGCGAC
toxA_R GCAGGCGATGACTGATGAC
hcnA_F TGAACGTCAACACGATATCCA
hcnA_R CATTGAGCACGTTGAGCAC
phzB_F TTCCTGCATTCCTTCGAACT
phzB_R ATGCCTTCGCGTTTGATCT
pcrV_F GACCCCACGCTATATGGCTA
pcrV_R GAGCCGCTGAGAAAATCCTT
pscL_F CGCGACTACCAGGACTACCT
pscL_R CGCTTCTGCTCCTGGTAAAC
exsA_F ATCGAGGAGTTGCTGATGCT
exsA_R TCCATGAATAGCTGCAGACG
exoS_F TGGTCTCTACACCGGCATTC
exoS_R CCTTGGTCGATCAGCTTTTG
fliC_F TGCAGCAGTCCACCAATATC
fliC_R TCGGAGATACGGGTCAGTTC
pilQ_F ACCTGGAGAAACTCGACGTG
pilQ_R CGGCTGCTCGATGGTATAG
glpD_F GAAACAGAAGTCGCCCTA
glpD_R GGTGAAACGGTCCAGATAGG
betI_F GAAGGCAACTTCGACGACA
betI_R GAATACAGGCGATGGTCGTT
norC_F CCGAGACCTTTACCAAAG
norC_R CAGGGTCTTCTCGGTG
dnr_F GTTCCGTTTCTCCAACAAGG
dnr_R GAAAGCGTCTCGATCTCGTC
anr_F GCAACGAGATCGGCAACTAT
anr_R CTCGATGGAGTCGAGGATGT
pilY1_F CAATTGCTGAACGACTCGAA
pilY1_R AAGAAGTTCACCCGGTGTTG
pelA_F GGTGCTGGAGGACTTCATC
pelA_R GGATGGCTGAAGGTATGGC
pslG_F CACGTAAGGGACTCTATCTGG
pslG_R AGGAAGTCTTTCCAGACCAC