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. 2019 Apr 30;8(5):giz034. doi: 10.1093/gigascience/giz034

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© The Author(s) 2019. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 2: — Scenario 2: 100 independent simulations of 2 cousins, with 1 individual being inbred, across variable sequencing depth and segregating sites with a MAF cutoff on 10%. J₉ to J₁ refer to the 9 Jacquard coefficients, R is the relatedness, and F₁ and F₂ refer to the individual inbreeding coefficients. Simulation (green) are the true values against which we compare ngsRelateV1 (red) and the new program ngsRelateV2 (blue).