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. 2019 Feb 5;6(3-4):169–186. doi: 10.1159/000496150

Table 3.

Significant loci for coronary artery disease reported by genome-wide association studies in Europeans (a) and Asians (b)

Chr Strongest SNP Position EA EAF OR or BETA p value n Closest gene Ref.
a
1
Europeans
rs11206510
55030366 T 0.85 1.08 2.34E–08 188,372 PCSK9 [19]
1 rs17114036 56497149 A 0.91 1.17 3.81E–19 133,226 PPAP2B [47]
1 rs629301 109275684 NA NA NA 1.00E–49 NA CELSR2 [78]
1 rs11810571 151789832 G 0.79 1.06 4.34E–08 345,035 TDRKH [20]
1 rs6689306 154423470 A 0.44 1.05 1.50E–09 NA IL6R [20]

2 rs16986953 19742712 A 0.07 1.11 4.80E–10 NA AK097927 [20]
2 rs7568458 85561052 A 0.45 1.06 2.40E–13 NA VAMP5, VAMP8, GGCX [20]
2 rs17678683 144528992 G 0.09 1.10 3.00E–09 179,585 ZEB2, ACO74093.1 [19]
2 rs1250229 215439661 T 0.26 1.07 2.88E–13 270,189 FN1 [20]

3 rs7623687 49411133 A 0.86 1.08 3.54E–10 333,836 RHOA [20]
3 rs142695226 124756354 G 0.14 1.07 1.58E–09 345,188 UMPS, ITGB5 [20]
3 rs9818870 138403280 T 0.15 1.15 7.44E–13 40,773 MRAS [44]
3 rs12493885 154122077 C 0.87 1.07 3.23E–08 251,805 ARHGEF26 [20]

4 rs17087335 56972417 T 0.21 1.06 4.60E–08 NA NOA1, REST [19]
4 rs10857147 80259918 T 0.27 1.05 5.81E–09 345,133 PRDM8, FGF5 [20]
4 rs7678555 119988346 C 0.28 1.05 1.35E–08 345,126 PDE5A, MAD2L1 [20]
4 rs6841581 147480038 A 0.15 1.07 4.60E–10 NA EDNAA [20]

6 rs6909752 22612400 A 0.33 1.05 2.26E–09 343,171 HDGFL1 [20]
6 rs17609940 35067023 G 0.75 1.07 1.36E–08 137,412 ANKS1A [47]
6 rs56336142 39166323 T 0.81 1.07 1.85E–08 188,349 KCNK5 [19]
6 rs12190287 133893387 C 0.62 1.08 1.70E–12 130,888 TCF21 [47]
6 rs10455872 160589086 G 0.07 1.31 1.70E–49 NA LPA [20]
6 rs4252185 160702419 C 0.06 1.34 1.64E–32 NA PLG [19]

7 rs2107595 19009765 A 0.18 1.08 3.40E–13 NA HDAC9 [20]
7 rs11556924 130023656 C 0.62 1.09 9.18E–18 134,200 ZC3HC1 [47]
7 rs3918226 150993088 T 0.07 1.13 1.60E–12 NA NOS3 [20]

8 rs2954029 125478730 A 0.54 1.06 5.20E–13 NA TRIB1 [20]

9 rs579459 133278724 C 0.21 1.10 4.08E–14 123,978 ABO [47]

10 rs2505083 30046193 C 0.39 1.06 6.85E–09 169,421 KIAA1462 [19]
10 rs501120 44258419 T 0.87 1.33 9.46E–08 7,181 CXCL12 [17]
10 rs2246942 89245129 G 0.35 1.08 3.50E–16 NA LIPA [20]
10 rs12413409 102959339 G 0.89 1.12 1.03E–09 129,741 NT5C2, CNNM2, CYP17A1 [47]

11 rs10840293 9729649 A 0.55 1.05   NA SWAP70 [20]
11 rs3993105 13281524 T 0.68 1.05 4.88E–08 340,699 ARNTL [20]
11 rs974819 103789839 T 0.32 1.07 2.41E–09 64,881 PDGFD [46]
11 rs964184 116778201 NA NA NA 2.00E–108 NA ZPR1 [78]

12 rs3184504 111446804 T 0.42 1.07 1.03E–09 NA SH2B3 [19]
12 rs11830157 117827636 G 0.36 1.12 2.12E–09 NA KSR2 [19]
12 rs2244608 120979185 G 0.35 1.05 7.90E–10 345,106 HFN1A [20]

13 rs1924981 28448508 T 0.33 1.05 1.90E–07 NA FLT1 [20]

14 rs2895811 99667605 C 0.43 1.07 1.14E–09 114,238 HHIPL1 [47]

15 rs56062135 67163292 C 0.79 1.07 4.52E–09 184,037 SMAD3 [19]
15 rs7164479 78830712 T 0.58 1.07 6.40E–18 NA ADAMTS7 [20]
15 rs8042271 89030987 G 0.90 1.10 3.68E–08 162,206 MFGE8, ABHD2 [19]
15 rs17514846 90873320 A 0.44 1.05 3.10E–07 NA FURIN, FES [19]

16 rs7500448 83012185 A 0.77 1.06 4.90E–10 337,399 CDH13 [20]

17 rs216172 2223210 C 0.37 1.07 1.15E–09 111,538 SMG6, SRR [47]
17 rs46522 48911235 T 0.53 1.06 1.81E–08 137,633 UBE2Z [47]
17 rs7212798 60936127 C 0.15 1.08 1.88E–08 188,377 BCAS3 [19]

18 rs8082812 8522684 NA NA NA 5.00E–67 NA THEM1S3P - AKR1B1P6 [78]
18 rs663129 60171168 A 0.26 1.06 3.20E–08 NA PMA1P1, MC4R [19]

19 rs6511720 11091630 G 0.88 1.14 7.90E–22 NA LDLR [20]
19 rs12976411 32391114 A 0.09 1.49 1.18E–14 NA ZNF507, LOC400684 [19]
19 rs8108632 41348629 T 0.48 1.05 4.13E–08 345,058 TGFB1 [20]
19 rs4420638 44919689 NA NA NA 1.00E–22 NA APOC1 – APOC1P1 [78]
19 rs1964272 45687010 G 0.52 1.05 2.52E–08 343,548 SNAPD2 [20]

21 rs28451064 34221526 A 0.12 1.14 2.60E–23 NA KCNE2 [20]
21 rs460976 41463567 NA NA NA 1.00E–08 NA MX1 - TMPRSS2 [78]

22 rs180803 24262890 G 0.97 1.20 1.64E–10 174,076 POM121L9P, ADORA2A [19]

bAsians                

2 rs2123536 19745816 T 0.39 1.12 6.83E–11 33,466 TTC32, WDR35 [48]

4 rs1842896 155590307 T 0.76 1.14 1.26E–11 33,466 GUCY1A3 [48]

6 rs9349379 12903725 G 0.349 1.34 8.02E–10 4,496 PHACTR1 [79]
6 rs9268402 32373576 G 0.59 1.16 2.77E–15 33,466 BTNL2, C6orf10 [48]
6 rs12524865 133875536 C 0.61 1.11 1.87E–07 24,724 TCF21 [48]

9 rs10738607 22088095 G 0.64 0.78 2.37E–08 1,237 CDKN2A, CDKN2B [80]

12 rs7136259 89687411 T 0.39 1.11 5.68E–10 33,466 ATP2B1 [48]
12 rs3782889 110912851 C 0.21 1.26 3.95E–14 13,742 MYL2 [81]
12 rs671 111803962 A 0.23 1.43 1.6E–34 12,041 ALDH2 [82]
12 rs11066280 112379979 A 0.17 1.19 1.69E–11 24,741 C12orf51 [48]

Chr, chromosome; EA, effect allele; EAF, effect allele frequency; NA, not available.